Gene : Medtr3g072430 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12831 - TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED Description:  general transcription factor IIH subunit, putative
Genomic Order:  3606 Name:  ? Medtr3g072430
Secondary Identifier:  ? PAC:31054125
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g072430 0.5kb upstream 0.5kb upstream 6264 true chr3: 32559890-32566153 Medicago truncatula
Medtr3g072430 0.5kb upstream 0.5kb upstream 500 false chr3: 32559890-32560389 Medicago truncatula
Medtr3g072430 0.5kb downstream 0.5kb downstream 6264 true chr3: 32560390-32566653 Medicago truncatula
Medtr3g072430 0.5kb downstream 0.5kb downstream 500 false chr3: 32566154-32566653 Medicago truncatula
Medtr3g072430 1.0kb upstream 1.0kb upstream 6764 true chr3: 32559390-32566153 Medicago truncatula
Medtr3g072430 1.0kb upstream 1.0kb upstream 1000 false chr3: 32559390-32560389 Medicago truncatula
Medtr3g072430 1.0kb downstream 1.0kb downstream 6764 true chr3: 32560390-32567153 Medicago truncatula
Medtr3g072430 1.0kb downstream 1.0kb downstream 1000 false chr3: 32566154-32567153 Medicago truncatula
Medtr3g072430 2.0kb upstream 2.0kb upstream 7764 true chr3: 32558390-32566153 Medicago truncatula
Medtr3g072430 2.0kb upstream 2.0kb upstream 2000 false chr3: 32558390-32560389 Medicago truncatula
Medtr3g072430 2.0kb downstream 2.0kb downstream 7764 true chr3: 32560390-32568153 Medicago truncatula
Medtr3g072430 2.0kb downstream 2.0kb downstream 2000 false chr3: 32566154-32568153 Medicago truncatula
Medtr3g072430 5.0kb upstream 5.0kb upstream 10764 true chr3: 32555390-32566153 Medicago truncatula
Medtr3g072430 5.0kb upstream 5.0kb upstream 5000 false chr3: 32555390-32560389 Medicago truncatula
Medtr3g072430 5.0kb downstream 5.0kb downstream 10764 true chr3: 32560390-32571153 Medicago truncatula
Medtr3g072430 5.0kb downstream 5.0kb downstream 5000 false chr3: 32566154-32571153 Medicago truncatula
Medtr3g072430 10.0kb upstream 10.0kb upstream 15764 true chr3: 32550390-32566153 Medicago truncatula
Medtr3g072430 10.0kb upstream 10.0kb upstream 10000 false chr3: 32550390-32560389 Medicago truncatula
Medtr3g072430 10.0kb downstream 10.0kb downstream 15764 true chr3: 32560390-32576153 Medicago truncatula
Medtr3g072430 10.0kb downstream 10.0kb downstream 10000 false chr3: 32566154-32576153 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302368 5265 Fabidae View MSA
124067493 5270 Rosid View MSA
123737949 5271 Pentapetalae View MSA
122790317 5272 Eudicot View MSA
122044771 5273 Angiosperm View MSA
121347029 5274 Embryophyte View MSA
123426476 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.211        
cufflinks 0.231        
cufflinks 0.318       High
cufflinks 0.341       High
cufflinks 0.353       High
cufflinks 0.196        
cufflinks 0.192        
cufflinks 0.196        
cufflinks 0.178       Low

0 Strain