Gene : Medtr3g065080 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR22849:SF43 - U-BOX DOMAIN-CONTAINING PROTEIN 54-RELATED Description:  Avr9/Cf-9 rapidly elicited protein
Genomic Order:  3186 Name:  ? Medtr3g065080
Secondary Identifier:  ? PAC:31054550
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g065080 0.5kb upstream 0.5kb upstream 2717 true chr3: 29352715-29355431 Medicago truncatula
Medtr3g065080 0.5kb upstream 0.5kb upstream 500 false chr3: 29352715-29353214 Medicago truncatula
Medtr3g065080 0.5kb downstream 0.5kb downstream 2717 true chr3: 29353215-29355931 Medicago truncatula
Medtr3g065080 0.5kb downstream 0.5kb downstream 500 false chr3: 29355432-29355931 Medicago truncatula
Medtr3g065080 1.0kb upstream 1.0kb upstream 3217 true chr3: 29352215-29355431 Medicago truncatula
Medtr3g065080 1.0kb upstream 1.0kb upstream 1000 false chr3: 29352215-29353214 Medicago truncatula
Medtr3g065080 1.0kb downstream 1.0kb downstream 3217 true chr3: 29353215-29356431 Medicago truncatula
Medtr3g065080 1.0kb downstream 1.0kb downstream 1000 false chr3: 29355432-29356431 Medicago truncatula
Medtr3g065080 2.0kb upstream 2.0kb upstream 4217 true chr3: 29351215-29355431 Medicago truncatula
Medtr3g065080 2.0kb upstream 2.0kb upstream 2000 false chr3: 29351215-29353214 Medicago truncatula
Medtr3g065080 2.0kb downstream 2.0kb downstream 4217 true chr3: 29353215-29357431 Medicago truncatula
Medtr3g065080 2.0kb downstream 2.0kb downstream 2000 false chr3: 29355432-29357431 Medicago truncatula
Medtr3g065080 5.0kb upstream 5.0kb upstream 7217 true chr3: 29348215-29355431 Medicago truncatula
Medtr3g065080 5.0kb upstream 5.0kb upstream 5000 false chr3: 29348215-29353214 Medicago truncatula
Medtr3g065080 5.0kb downstream 5.0kb downstream 7217 true chr3: 29353215-29360431 Medicago truncatula
Medtr3g065080 5.0kb downstream 5.0kb downstream 5000 false chr3: 29355432-29360431 Medicago truncatula
Medtr3g065080 10.0kb upstream 10.0kb upstream 12217 true chr3: 29343215-29355431 Medicago truncatula
Medtr3g065080 10.0kb upstream 10.0kb upstream 10000 false chr3: 29343215-29353214 Medicago truncatula
Medtr3g065080 10.0kb downstream 10.0kb downstream 12217 true chr3: 29353215-29365431 Medicago truncatula
Medtr3g065080 10.0kb downstream 10.0kb downstream 10000 false chr3: 29355432-29365431 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311953 5265 Fabidae View MSA
124062447 5270 Rosid View MSA
123744256 5271 Pentapetalae View MSA
122789600 5272 Eudicot View MSA
122042359 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 128.435     High High
cufflinks 58.897     High  
cufflinks 133.332     High High
cufflinks 37.974     High Low
cufflinks 103.988     High  
cufflinks 36.211     High Low
cufflinks 84.715     High  
cufflinks 73.523     High  
cufflinks 38.706     High Low

0 Strain