Gene : Medtr3g118290 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO Description:  RNA polymerase sigma factor
Genomic Order:  6734 Name:  ? Medtr3g118290
Secondary Identifier:  ? PAC:31055563
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g118290 0.5kb upstream 0.5kb upstream 4288 true chr3: 55374030-55378317 Medicago truncatula
Medtr3g118290 0.5kb upstream 0.5kb upstream 500 false chr3: 55377818-55378317 Medicago truncatula
Medtr3g118290 0.5kb downstream 0.5kb downstream 4288 true chr3: 55373530-55377817 Medicago truncatula
Medtr3g118290 0.5kb downstream 0.5kb downstream 500 false chr3: 55373530-55374029 Medicago truncatula
Medtr3g118290 1.0kb upstream 1.0kb upstream 4788 true chr3: 55374030-55378817 Medicago truncatula
Medtr3g118290 1.0kb upstream 1.0kb upstream 1000 false chr3: 55377818-55378817 Medicago truncatula
Medtr3g118290 1.0kb downstream 1.0kb downstream 4788 true chr3: 55373030-55377817 Medicago truncatula
Medtr3g118290 1.0kb downstream 1.0kb downstream 1000 false chr3: 55373030-55374029 Medicago truncatula
Medtr3g118290 2.0kb upstream 2.0kb upstream 5788 true chr3: 55374030-55379817 Medicago truncatula
Medtr3g118290 2.0kb upstream 2.0kb upstream 2000 false chr3: 55377818-55379817 Medicago truncatula
Medtr3g118290 2.0kb downstream 2.0kb downstream 5788 true chr3: 55372030-55377817 Medicago truncatula
Medtr3g118290 2.0kb downstream 2.0kb downstream 2000 false chr3: 55372030-55374029 Medicago truncatula
Medtr3g118290 5.0kb upstream 5.0kb upstream 8788 true chr3: 55374030-55382817 Medicago truncatula
Medtr3g118290 5.0kb upstream 5.0kb upstream 5000 false chr3: 55377818-55382817 Medicago truncatula
Medtr3g118290 5.0kb downstream 5.0kb downstream 8788 true chr3: 55369030-55377817 Medicago truncatula
Medtr3g118290 5.0kb downstream 5.0kb downstream 5000 false chr3: 55369030-55374029 Medicago truncatula
Medtr3g118290 10.0kb upstream 10.0kb upstream 13788 true chr3: 55374030-55387817 Medicago truncatula
Medtr3g118290 10.0kb upstream 10.0kb upstream 10000 false chr3: 55377818-55387817 Medicago truncatula
Medtr3g118290 10.0kb downstream 10.0kb downstream 13788 true chr3: 55364030-55377817 Medicago truncatula
Medtr3g118290 10.0kb downstream 10.0kb downstream 10000 false chr3: 55364030-55374029 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310263 5265 Fabidae View MSA
124065306 5270 Rosid View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.606        
cufflinks 11.033     High  
cufflinks 15.442     High  
cufflinks 0.491        
cufflinks 22.252     High High
cufflinks 0.032     Low Low
cufflinks 0.682        
cufflinks 15.012     High  
cufflinks 0.601        

0 Strain