Gene : Medtr3g498725 M. truncatula Mt4.0v1
Defline:  (1 of 6) PTHR11638:SF119 - CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC Description:  ATP-dependent Clp protease ATP-binding subunit
Genomic Order:  5339 Name:  ? Medtr3g498725
Secondary Identifier:  ? PAC:31054198
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g498725 0.5kb upstream 0.5kb upstream 8010 true chr3: 45108977-45116986 Medicago truncatula
Medtr3g498725 0.5kb upstream 0.5kb upstream 500 false chr3: 45108977-45109476 Medicago truncatula
Medtr3g498725 0.5kb downstream 0.5kb downstream 8010 true chr3: 45109477-45117486 Medicago truncatula
Medtr3g498725 0.5kb downstream 0.5kb downstream 500 false chr3: 45116987-45117486 Medicago truncatula
Medtr3g498725 1.0kb upstream 1.0kb upstream 8510 true chr3: 45108477-45116986 Medicago truncatula
Medtr3g498725 1.0kb upstream 1.0kb upstream 1000 false chr3: 45108477-45109476 Medicago truncatula
Medtr3g498725 1.0kb downstream 1.0kb downstream 8510 true chr3: 45109477-45117986 Medicago truncatula
Medtr3g498725 1.0kb downstream 1.0kb downstream 1000 false chr3: 45116987-45117986 Medicago truncatula
Medtr3g498725 2.0kb upstream 2.0kb upstream 9510 true chr3: 45107477-45116986 Medicago truncatula
Medtr3g498725 2.0kb upstream 2.0kb upstream 2000 false chr3: 45107477-45109476 Medicago truncatula
Medtr3g498725 2.0kb downstream 2.0kb downstream 9510 true chr3: 45109477-45118986 Medicago truncatula
Medtr3g498725 2.0kb downstream 2.0kb downstream 2000 false chr3: 45116987-45118986 Medicago truncatula
Medtr3g498725 5.0kb upstream 5.0kb upstream 12510 true chr3: 45104477-45116986 Medicago truncatula
Medtr3g498725 5.0kb upstream 5.0kb upstream 5000 false chr3: 45104477-45109476 Medicago truncatula
Medtr3g498725 5.0kb downstream 5.0kb downstream 12510 true chr3: 45109477-45121986 Medicago truncatula
Medtr3g498725 5.0kb downstream 5.0kb downstream 5000 false chr3: 45116987-45121986 Medicago truncatula
Medtr3g498725 10.0kb upstream 10.0kb upstream 17510 true chr3: 45099477-45116986 Medicago truncatula
Medtr3g498725 10.0kb upstream 10.0kb upstream 10000 false chr3: 45099477-45109476 Medicago truncatula
Medtr3g498725 10.0kb downstream 10.0kb downstream 17510 true chr3: 45109477-45126986 Medicago truncatula
Medtr3g498725 10.0kb downstream 10.0kb downstream 10000 false chr3: 45116987-45126986 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307634 5265 Fabidae View MSA
124063020 5270 Rosid View MSA
123738110 5271 Pentapetalae View MSA
122796801 5272 Eudicot View MSA
122047694 5273 Angiosperm View MSA
121345923 5274 Embryophyte View MSA
123426532 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.671     High  
cufflinks 78.148     High  
cufflinks 112.346     High High
cufflinks 11.508     High  
cufflinks 78.553     High  
cufflinks 7.238       Low
cufflinks 11.73     High  
cufflinks 84.356     High  
cufflinks 6.303       Low

0 Strain