Gene : Medtr6g088515 M. truncatula Mt4.0v1
Description:  photosystem II CP43 chlorophyll apoprotein, putative Genomic Order:  3680
Name:  ? Medtr6g088515 Secondary Identifier:  ? PAC:31102509
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g088515 0.5kb upstream 0.5kb upstream 808 true chr6: 33669140-33669947 Medicago truncatula
Medtr6g088515 0.5kb upstream 0.5kb upstream 500 false chr6: 33669448-33669947 Medicago truncatula
Medtr6g088515 0.5kb downstream 0.5kb downstream 808 true chr6: 33668640-33669447 Medicago truncatula
Medtr6g088515 0.5kb downstream 0.5kb downstream 500 false chr6: 33668640-33669139 Medicago truncatula
Medtr6g088515 1.0kb upstream 1.0kb upstream 1308 true chr6: 33669140-33670447 Medicago truncatula
Medtr6g088515 1.0kb upstream 1.0kb upstream 1000 false chr6: 33669448-33670447 Medicago truncatula
Medtr6g088515 1.0kb downstream 1.0kb downstream 1308 true chr6: 33668140-33669447 Medicago truncatula
Medtr6g088515 1.0kb downstream 1.0kb downstream 1000 false chr6: 33668140-33669139 Medicago truncatula
Medtr6g088515 2.0kb upstream 2.0kb upstream 2308 true chr6: 33669140-33671447 Medicago truncatula
Medtr6g088515 2.0kb upstream 2.0kb upstream 2000 false chr6: 33669448-33671447 Medicago truncatula
Medtr6g088515 2.0kb downstream 2.0kb downstream 2308 true chr6: 33667140-33669447 Medicago truncatula
Medtr6g088515 2.0kb downstream 2.0kb downstream 2000 false chr6: 33667140-33669139 Medicago truncatula
Medtr6g088515 5.0kb upstream 5.0kb upstream 5308 true chr6: 33669140-33674447 Medicago truncatula
Medtr6g088515 5.0kb upstream 5.0kb upstream 5000 false chr6: 33669448-33674447 Medicago truncatula
Medtr6g088515 5.0kb downstream 5.0kb downstream 5308 true chr6: 33664140-33669447 Medicago truncatula
Medtr6g088515 5.0kb downstream 5.0kb downstream 5000 false chr6: 33664140-33669139 Medicago truncatula
Medtr6g088515 10.0kb upstream 10.0kb upstream 10308 true chr6: 33669140-33679447 Medicago truncatula
Medtr6g088515 10.0kb upstream 10.0kb upstream 10000 false chr6: 33669448-33679447 Medicago truncatula
Medtr6g088515 10.0kb downstream 10.0kb downstream 10308 true chr6: 33659140-33669447 Medicago truncatula
Medtr6g088515 10.0kb downstream 10.0kb downstream 10000 false chr6: 33659140-33669139 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122265386 5265 Fabidae Singleton cluster - no MSA
124006438 5270 Rosid Singleton cluster - no MSA
123752529 5271 Pentapetalae View MSA
122774617 5272 Eudicot View MSA
122048462 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121310978 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain