Gene : Medtr8g027190 M. truncatula Mt4.0v1
Defline:  (1 of 7) KOG0106 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) Description:  RNA-binding (RRM/RBD/RNP motif) family protein
Genomic Order:  1269 Name:  ? Medtr8g027190
Secondary Identifier:  ? PAC:31071423
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g027190 0.5kb upstream 0.5kb upstream 3391   true chr8: 9556666-9560056 Medicago truncatula
Medtr8g027190 0.5kb upstream 0.5kb upstream 500   false chr8: 9556666-9557165 Medicago truncatula
Medtr8g027190 0.5kb downstream 0.5kb downstream 3391   true chr8: 9557166-9560556 Medicago truncatula
Medtr8g027190 0.5kb downstream 0.5kb downstream 500   false chr8: 9560057-9560556 Medicago truncatula
Medtr8g027190 1.0kb upstream 1.0kb upstream 3891   true chr8: 9556166-9560056 Medicago truncatula
Medtr8g027190 1.0kb upstream 1.0kb upstream 1000   false chr8: 9556166-9557165 Medicago truncatula
Medtr8g027190 1.0kb downstream 1.0kb downstream 3891   true chr8: 9557166-9561056 Medicago truncatula
Medtr8g027190 1.0kb downstream 1.0kb downstream 1000   false chr8: 9560057-9561056 Medicago truncatula
Medtr8g027190 2.0kb upstream 2.0kb upstream 4891   true chr8: 9555166-9560056 Medicago truncatula
Medtr8g027190 2.0kb upstream 2.0kb upstream 2000   false chr8: 9555166-9557165 Medicago truncatula
Medtr8g027190 2.0kb downstream 2.0kb downstream 4891   true chr8: 9557166-9562056 Medicago truncatula
Medtr8g027190 2.0kb downstream 2.0kb downstream 2000   false chr8: 9560057-9562056 Medicago truncatula
Medtr8g027190 5.0kb upstream 5.0kb upstream 7891   true chr8: 9552166-9560056 Medicago truncatula
Medtr8g027190 5.0kb upstream 5.0kb upstream 5000   false chr8: 9552166-9557165 Medicago truncatula
Medtr8g027190 5.0kb downstream 5.0kb downstream 7891   true chr8: 9557166-9565056 Medicago truncatula
Medtr8g027190 5.0kb downstream 5.0kb downstream 5000   false chr8: 9560057-9565056 Medicago truncatula
Medtr8g027190 10.0kb upstream 10.0kb upstream 12891   true chr8: 9547166-9560056 Medicago truncatula
Medtr8g027190 10.0kb upstream 10.0kb upstream 10000   false chr8: 9547166-9557165 Medicago truncatula
Medtr8g027190 10.0kb downstream 10.0kb downstream 12891   true chr8: 9557166-9570056 Medicago truncatula
Medtr8g027190 10.0kb downstream 10.0kb downstream 10000   false chr8: 9560057-9570056 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310025 5265 Fabidae View MSA
124069321 5270 Rosid View MSA
123751972 5271 Pentapetalae View MSA
122797642 5272 Eudicot View MSA
122042700 5273 Angiosperm View MSA
121346873 5274 Embryophyte View MSA
123428073 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.688       Low
cufflinks 0.799        
cufflinks 0.75        
cufflinks 1.569       High
cufflinks 1.064        
cufflinks 0.838        
cufflinks 1.152        
cufflinks 0.782        
cufflinks 1.331       High

0 Strain