Gene : Medtr8g080210 M. truncatula Mt4.0v1
Defline:  (1 of 4) PF12056 - Protein of unknown function (DUF3537) (DUF3537) Description:  extracellular ligand-gated ion channel protein
Genomic Order:  4210 Name:  ? Medtr8g080210
Secondary Identifier:  ? PAC:31069586
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g080210 0.5kb upstream 0.5kb upstream 4206   true chr8: 34457370-34461575 Medicago truncatula
Medtr8g080210 0.5kb upstream 0.5kb upstream 500   false chr8: 34461076-34461575 Medicago truncatula
Medtr8g080210 0.5kb downstream 0.5kb downstream 4206   true chr8: 34456870-34461075 Medicago truncatula
Medtr8g080210 0.5kb downstream 0.5kb downstream 500   false chr8: 34456870-34457369 Medicago truncatula
Medtr8g080210 1.0kb upstream 1.0kb upstream 4706   true chr8: 34457370-34462075 Medicago truncatula
Medtr8g080210 1.0kb upstream 1.0kb upstream 1000   false chr8: 34461076-34462075 Medicago truncatula
Medtr8g080210 1.0kb downstream 1.0kb downstream 4706   true chr8: 34456370-34461075 Medicago truncatula
Medtr8g080210 1.0kb downstream 1.0kb downstream 1000   false chr8: 34456370-34457369 Medicago truncatula
Medtr8g080210 2.0kb upstream 2.0kb upstream 5706   true chr8: 34457370-34463075 Medicago truncatula
Medtr8g080210 2.0kb upstream 2.0kb upstream 2000   false chr8: 34461076-34463075 Medicago truncatula
Medtr8g080210 2.0kb downstream 2.0kb downstream 5706   true chr8: 34455370-34461075 Medicago truncatula
Medtr8g080210 2.0kb downstream 2.0kb downstream 2000   false chr8: 34455370-34457369 Medicago truncatula
Medtr8g080210 5.0kb upstream 5.0kb upstream 8706   true chr8: 34457370-34466075 Medicago truncatula
Medtr8g080210 5.0kb upstream 5.0kb upstream 5000   false chr8: 34461076-34466075 Medicago truncatula
Medtr8g080210 5.0kb downstream 5.0kb downstream 8706   true chr8: 34452370-34461075 Medicago truncatula
Medtr8g080210 5.0kb downstream 5.0kb downstream 5000   false chr8: 34452370-34457369 Medicago truncatula
Medtr8g080210 10.0kb upstream 10.0kb upstream 13706   true chr8: 34457370-34471075 Medicago truncatula
Medtr8g080210 10.0kb upstream 10.0kb upstream 10000   false chr8: 34461076-34471075 Medicago truncatula
Medtr8g080210 10.0kb downstream 10.0kb downstream 13706   true chr8: 34447370-34461075 Medicago truncatula
Medtr8g080210 10.0kb downstream 10.0kb downstream 10000   false chr8: 34447370-34457369 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299519 5265 Fabidae View MSA
124067938 5270 Rosid View MSA
123750273 5271 Pentapetalae View MSA
122773558 5272 Eudicot View MSA
122045832 5273 Angiosperm View MSA
121310512 5274 Embryophyte View MSA
123347975 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.94       High
cufflinks 0.974        
cufflinks 0.895        
cufflinks 0.426       Low
cufflinks 1.18        
cufflinks 0.357       Low
cufflinks 0.852        
cufflinks 0.614        
cufflinks 1.783       High

0 Strain