Gene : Medtr0058s0020 M. truncatula Mt4.0v1
Description:  Ty3/Gypsy polyprotein/retrotransposon, putative Genomic Order:  2
Name:  ? Medtr0058s0020 Secondary Identifier:  ? PAC:31061782
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0058s0020 0.5kb upstream 0.5kb upstream 773   true scaffold0058: 16281-17053 Medicago truncatula
Medtr0058s0020 0.5kb upstream 0.5kb upstream 500   false scaffold0058: 16554-17053 Medicago truncatula
Medtr0058s0020 0.5kb downstream 0.5kb downstream 773   true scaffold0058: 15781-16553 Medicago truncatula
Medtr0058s0020 0.5kb downstream 0.5kb downstream 500   false scaffold0058: 15781-16280 Medicago truncatula
Medtr0058s0020 1.0kb upstream 1.0kb upstream 1273   true scaffold0058: 16281-17553 Medicago truncatula
Medtr0058s0020 1.0kb upstream 1.0kb upstream 1000   false scaffold0058: 16554-17553 Medicago truncatula
Medtr0058s0020 1.0kb downstream 1.0kb downstream 1273   true scaffold0058: 15281-16553 Medicago truncatula
Medtr0058s0020 1.0kb downstream 1.0kb downstream 1000   false scaffold0058: 15281-16280 Medicago truncatula
Medtr0058s0020 2.0kb upstream 2.0kb upstream 2273   true scaffold0058: 16281-18553 Medicago truncatula
Medtr0058s0020 2.0kb upstream 2.0kb upstream 2000   false scaffold0058: 16554-18553 Medicago truncatula
Medtr0058s0020 2.0kb downstream 2.0kb downstream 2273   true scaffold0058: 14281-16553 Medicago truncatula
Medtr0058s0020 2.0kb downstream 2.0kb downstream 2000   false scaffold0058: 14281-16280 Medicago truncatula
Medtr0058s0020 5.0kb upstream 5.0kb upstream 5273   true scaffold0058: 16281-21553 Medicago truncatula
Medtr0058s0020 5.0kb upstream 5.0kb upstream 5000   false scaffold0058: 16554-21553 Medicago truncatula
Medtr0058s0020 5.0kb downstream 5.0kb downstream 5273   true scaffold0058: 11281-16553 Medicago truncatula
Medtr0058s0020 5.0kb downstream 5.0kb downstream 5000   false scaffold0058: 11281-16280 Medicago truncatula
Medtr0058s0020 10.0kb upstream 10.0kb upstream 10273   true scaffold0058: 16281-26553 Medicago truncatula
Medtr0058s0020 10.0kb upstream 10.0kb upstream 10000   false scaffold0058: 16554-26553 Medicago truncatula
Medtr0058s0020 10.0kb downstream 10.0kb downstream 10273   true scaffold0058: 6281-16553 Medicago truncatula
Medtr0058s0020 10.0kb downstream 10.0kb downstream 10000   false scaffold0058: 6281-16280 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315059 5265 Fabidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain