285 Genes
| Primary Identifier | Defline | Organism Name | Symbol | Length | Chromosome Location |
|---|---|---|---|---|---|
| 30024.t000014 | (1 of 26) PF03732 - Retrotransposon gag protein (Retrotrans_gag) | R. communis v0.1 |
739
 |
30024: 248172-248910 | |
| Cucsa.317590 | (1 of 34) PF08284 - Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 |
1529
|
scaffold03054: 1966-3494 | |
| Cucsa.316790 | (1 of 2) PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) | C. sativus v1.0 |
3986
|
scaffold03050: 8120-12105 | |
| Cucsa.316910 | (1 of 89) PTHR10178:SF14 - RETROVIRUS POLYPROTEIN | C. sativus v1.0 |
1106
|
scaffold03050: 140719-141824 | |
| Cucsa.369450 | (1 of 3) PF00078//PF03732//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Retrotransposon gag protein (Retrotrans_gag) // Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 |
1867
|
scaffold03646: 15358-17224 | |
| Cucsa.369460 | (1 of 9) PTHR10178//PTHR10178:SF309 - GAG/POL/ENV POLYPROTEIN | C. sativus v1.0 |
2251
|
scaffold03646: 26966-29216 | |
| Cucsa.383100 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 |
3193
|
scaffold03882: 29786-32978 | |
| Cucsa.023240 | (1 of 1) PF00078//PF00385//PF03732//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Chromo (CHRromatin Organisation MOdifier) domain (Chromo) // Retrotransposon gag protein (Retrotrans_gag) // Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 |
4683
|
scaffold00322: 21557-26239 | |
| Cucsa.079650 | (1 of 6) PF13650 - Aspartyl protease (Asp_protease_2) | C. sativus v1.0 |
2214
|
scaffold00793: 2534047-2536260 | |
| Cucsa.054680 | (1 of 4) PF00078//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 |
4357
|
scaffold00585: 230228-234584 | |
| Cucsa.108550 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 |
2750
|
scaffold00931: 681271-684020 | |
| Cucsa.355910 | (1 of 34) PF08284 - Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 |
1492
|
scaffold03577: 535432-536923 | |
| Cucsa.027470 | (1 of 1) PF00385//PF00665 - Chromo (CHRromatin Organisation MOdifier) domain (Chromo) // Integrase core domain (rve) | C. sativus v1.0 |
4266
|
scaffold00378: 234423-238688 | |
| Cucsa.031240.1 | (1 of 2) PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 |
5197
|
scaffold00429: 133878-139074 | |
| Cucsa.058600 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 |
3710
|
scaffold00614: 727675-731384 | |
| Cucsa.156090 | (1 of 9) PTHR10178//PTHR10178:SF309 - GAG/POL/ENV POLYPROTEIN | C. sativus v1.0 |
2184
|
scaffold01139: 348586-350769 | |
| Cucsa.212270 | (1 of 9) PTHR10178//PTHR10178:SF309 - GAG/POL/ENV POLYPROTEIN | C. sativus v1.0 |
2818
|
scaffold01543: 62975-65792 | |
| Cucsa.212990 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 |
2757
|
scaffold01543: 750541-753297 | |
| Cucsa.213260 | (1 of 3) PF00078//PF03732//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Retrotransposon gag protein (Retrotrans_gag) // Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 |
2205
|
scaffold01543: 1011775-1013979 | |
| Cucsa.235840 | (1 of 1) PF00078//PF00665//PF03732 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retrotransposon gag protein (Retrotrans_gag) | C. sativus v1.0 |
3541
|
scaffold02012: 603398-606938 | |
| Cucsa.249330 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 |
5188
|
scaffold02209: 72462-77649 | |
| Cucsa.265940 | (1 of 3) PF00078//PF03732//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Retrotransposon gag protein (Retrotrans_gag) // Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 |
2104
|
scaffold02352: 404216-406319 | |
| Cucsa.273890 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 |
4598
|
scaffold02511: 875958-880555 | |
| Cucsa.315450 | (1 of 34) PF08284 - Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 |
1944
|
scaffold03024: 95-2038 | |
| Cucsa.315850 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 |
2385
|
scaffold03033: 15733-18117 | |
| Cucsa.334140 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 |
2394
|
scaffold03306: 745-3138 | |
| Thecc1EG002384 | (1 of 57) PF08284 - Retroviral aspartyl protease (RVP_2) | T. cacao v1.1 |
8953
|
scaffold_1: 13558142-13567094 | |
| Thecc1EG002485 | (1 of 230) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | T. cacao v1.1 |
7680
|
scaffold_1: 14198429-14206108 | |
| Thecc1EG002769 | (1 of 102) PF00098 - Zinc knuckle (zf-CCHC) | T. cacao v1.1 |
21576
|
scaffold_1: 16206752-16228327 | |
| Thecc1EG003164 | (1 of 139) PF03732 - Retrotransposon gag protein (Retrotrans_gag) | T. cacao v1.1 |
2280
|
scaffold_1: 19958271-19960550 |
285 Members
| Protein Name | Organism Name | Cluster ID | Cluster Name | Same Organism Count | Method ID | Method Name |
|---|---|---|---|---|---|---|
| Cucsa.023240.1 | C. sativus v1.0 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5270 | Rosid |
| Cucsa.058600.1 | C. sativus v1.0 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5270 | Rosid |
| Cucsa.108550.1 | C. sativus v1.0 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5270 | Rosid |
| Cucsa.212270.1 | C. sativus v1.0 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5270 | Rosid |
| Cucsa.235840.1 | C. sativus v1.0 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5270 | Rosid |
| Cucsa.249330.1 | C. sativus v1.0 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5270 | Rosid |
| Cucsa.316910.1 | C. sativus v1.0 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5270 | Rosid |
| Cucsa.317590.1 | C. sativus v1.0 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5270 | Rosid |
| Cucsa.383100.1 | C. sativus v1.0 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5270 | Rosid |
| Thecc1EG022803t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG023155t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG022818t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG039916t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG038839t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG039262t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG039121t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG039915t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG002485t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG002991t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG003516t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG003838t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG028107t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG045859t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG043584t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG043522t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG043497t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG044875t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG043384t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG043763t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
| Thecc1EG044456t1 | T. cacao v1.1 | 124074843 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 133 | 5270 | Rosid |
