Gene : Thecc1EG003164 T. cacao v1.1
Defline:  (1 of 139) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  2296
Name:  ? Thecc1EG003164 Secondary Identifier:  ? PAC:27432174
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG003164 0.5kb upstream 0.5kb upstream 2780 true scaffold_1: 19958271-19961050 Theobroma cacao
Thecc1EG003164 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 19960551-19961050 Theobroma cacao
Thecc1EG003164 0.5kb downstream 0.5kb downstream 2780 true scaffold_1: 19957771-19960550 Theobroma cacao
Thecc1EG003164 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 19957771-19958270 Theobroma cacao
Thecc1EG003164 1.0kb upstream 1.0kb upstream 3280 true scaffold_1: 19958271-19961550 Theobroma cacao
Thecc1EG003164 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 19960551-19961550 Theobroma cacao
Thecc1EG003164 1.0kb downstream 1.0kb downstream 3280 true scaffold_1: 19957271-19960550 Theobroma cacao
Thecc1EG003164 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 19957271-19958270 Theobroma cacao
Thecc1EG003164 2.0kb upstream 2.0kb upstream 4280 true scaffold_1: 19958271-19962550 Theobroma cacao
Thecc1EG003164 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 19960551-19962550 Theobroma cacao
Thecc1EG003164 2.0kb downstream 2.0kb downstream 4280 true scaffold_1: 19956271-19960550 Theobroma cacao
Thecc1EG003164 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 19956271-19958270 Theobroma cacao
Thecc1EG003164 5.0kb upstream 5.0kb upstream 7280 true scaffold_1: 19958271-19965550 Theobroma cacao
Thecc1EG003164 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 19960551-19965550 Theobroma cacao
Thecc1EG003164 5.0kb downstream 5.0kb downstream 7280 true scaffold_1: 19953271-19960550 Theobroma cacao
Thecc1EG003164 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 19953271-19958270 Theobroma cacao
Thecc1EG003164 10.0kb upstream 10.0kb upstream 12280 true scaffold_1: 19958271-19970550 Theobroma cacao
Thecc1EG003164 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 19960551-19970550 Theobroma cacao
Thecc1EG003164 10.0kb downstream 10.0kb downstream 12280 true scaffold_1: 19948271-19960550 Theobroma cacao
Thecc1EG003164 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 19948271-19958270 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823880 5264 Brassicales-Malvales View MSA
124319934 5266 SBM View MSA
124168432 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain