Gene : Cucsa.054680 C. sativus v1.0
Defline:  (1 of 4) PF00078//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Retroviral aspartyl protease (RVP_2) Genomic Order:  21
Name:  ? Cucsa.054680 Secondary Identifier:  ? PAC:16954433
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.054680 0.5kb upstream 0.5kb upstream 4857 true scaffold00585: 229728-234584 Cucumis sativus
Cucsa.054680 0.5kb upstream 0.5kb upstream 500 false scaffold00585: 229728-230227 Cucumis sativus
Cucsa.054680 0.5kb downstream 0.5kb downstream 4857 true scaffold00585: 230228-235084 Cucumis sativus
Cucsa.054680 0.5kb downstream 0.5kb downstream 500 false scaffold00585: 234585-235084 Cucumis sativus
Cucsa.054680 1.0kb upstream 1.0kb upstream 5357 true scaffold00585: 229228-234584 Cucumis sativus
Cucsa.054680 1.0kb upstream 1.0kb upstream 1000 false scaffold00585: 229228-230227 Cucumis sativus
Cucsa.054680 1.0kb downstream 1.0kb downstream 5357 true scaffold00585: 230228-235584 Cucumis sativus
Cucsa.054680 1.0kb downstream 1.0kb downstream 1000 false scaffold00585: 234585-235584 Cucumis sativus
Cucsa.054680 2.0kb upstream 2.0kb upstream 6357 true scaffold00585: 228228-234584 Cucumis sativus
Cucsa.054680 2.0kb upstream 2.0kb upstream 2000 false scaffold00585: 228228-230227 Cucumis sativus
Cucsa.054680 2.0kb downstream 2.0kb downstream 6357 true scaffold00585: 230228-236584 Cucumis sativus
Cucsa.054680 2.0kb downstream 2.0kb downstream 2000 false scaffold00585: 234585-236584 Cucumis sativus
Cucsa.054680 5.0kb upstream 5.0kb upstream 9357 true scaffold00585: 225228-234584 Cucumis sativus
Cucsa.054680 5.0kb upstream 5.0kb upstream 5000 false scaffold00585: 225228-230227 Cucumis sativus
Cucsa.054680 5.0kb downstream 5.0kb downstream 9357 true scaffold00585: 230228-239584 Cucumis sativus
Cucsa.054680 5.0kb downstream 5.0kb downstream 5000 false scaffold00585: 234585-239584 Cucumis sativus
Cucsa.054680 10.0kb upstream 10.0kb upstream 14357 true scaffold00585: 220228-234584 Cucumis sativus
Cucsa.054680 10.0kb upstream 10.0kb upstream 10000 false scaffold00585: 220228-230227 Cucumis sativus
Cucsa.054680 10.0kb downstream 10.0kb downstream 14357 true scaffold00585: 230228-244584 Cucumis sativus
Cucsa.054680 10.0kb downstream 10.0kb downstream 10000 false scaffold00585: 234585-244584 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122237441 5265 Fabidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain