32 Genes
Primary Identifier | Defline | Organism Name | Symbol | Length | Chromosome Location |
---|---|---|---|---|---|
Cucsa.317590 | (1 of 34) PF08284 - Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 | 1529 | scaffold03054: 1966-3494 | |
Cucsa.316790 | (1 of 2) PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) | C. sativus v1.0 | 3986 | scaffold03050: 8120-12105 | |
Cucsa.316910 | (1 of 89) PTHR10178:SF14 - RETROVIRUS POLYPROTEIN | C. sativus v1.0 | 1106 | scaffold03050: 140719-141824 | |
Cucsa.369450 | (1 of 3) PF00078//PF03732//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Retrotransposon gag protein (Retrotrans_gag) // Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 | 1867 | scaffold03646: 15358-17224 | |
Cucsa.369460 | (1 of 9) PTHR10178//PTHR10178:SF309 - GAG/POL/ENV POLYPROTEIN | C. sativus v1.0 | 2251 | scaffold03646: 26966-29216 | |
Cucsa.383100 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 | 3193 | scaffold03882: 29786-32978 | |
Cucsa.023240 | (1 of 1) PF00078//PF00385//PF03732//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Chromo (CHRromatin Organisation MOdifier) domain (Chromo) // Retrotransposon gag protein (Retrotrans_gag) // Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 | 4683 | scaffold00322: 21557-26239 | |
Cucsa.079650 | (1 of 6) PF13650 - Aspartyl protease (Asp_protease_2) | C. sativus v1.0 | 2214 | scaffold00793: 2534047-2536260 | |
Cucsa.054680 | (1 of 4) PF00078//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 | 4357 | scaffold00585: 230228-234584 | |
Cucsa.108550 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 | 2750 | scaffold00931: 681271-684020 | |
Cucsa.355910 | (1 of 34) PF08284 - Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 | 1492 | scaffold03577: 535432-536923 | |
Cucsa.027470 | (1 of 1) PF00385//PF00665 - Chromo (CHRromatin Organisation MOdifier) domain (Chromo) // Integrase core domain (rve) | C. sativus v1.0 | 4266 | scaffold00378: 234423-238688 | |
Cucsa.031240.1 | (1 of 2) PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 | 5197 | scaffold00429: 133878-139074 | |
Cucsa.058600 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 | 3710 | scaffold00614: 727675-731384 | |
Cucsa.156090 | (1 of 9) PTHR10178//PTHR10178:SF309 - GAG/POL/ENV POLYPROTEIN | C. sativus v1.0 | 2184 | scaffold01139: 348586-350769 | |
Cucsa.212270 | (1 of 9) PTHR10178//PTHR10178:SF309 - GAG/POL/ENV POLYPROTEIN | C. sativus v1.0 | 2818 | scaffold01543: 62975-65792 | |
Cucsa.212990 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 | 2757 | scaffold01543: 750541-753297 | |
Cucsa.213260 | (1 of 3) PF00078//PF03732//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Retrotransposon gag protein (Retrotrans_gag) // Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 | 2205 | scaffold01543: 1011775-1013979 | |
Cucsa.235840 | (1 of 1) PF00078//PF00665//PF03732 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retrotransposon gag protein (Retrotrans_gag) | C. sativus v1.0 | 3541 | scaffold02012: 603398-606938 | |
Cucsa.249330 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 | 5188 | scaffold02209: 72462-77649 | |
Cucsa.265940 | (1 of 3) PF00078//PF03732//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Retrotransposon gag protein (Retrotrans_gag) // Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 | 2104 | scaffold02352: 404216-406319 | |
Cucsa.273890 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 | 4598 | scaffold02511: 875958-880555 | |
Cucsa.315450 | (1 of 34) PF08284 - Retroviral aspartyl protease (RVP_2) | C. sativus v1.0 | 1944 | scaffold03024: 95-2038 | |
Cucsa.315850 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 | 2385 | scaffold03033: 15733-18117 | |
Cucsa.334140 | (1 of 86) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H | C. sativus v1.0 | 2394 | scaffold03306: 745-3138 | |
MD15G1166500 | (1 of 1) PF00078//PF00098//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Zinc knuckle (zf-CCHC) // Retroviral aspartyl protease (RVP_2) | M. domestica v1.1 | 3088 | Chr15: 12503515-12506602 | |
MD09G1067600 | (1 of 1) PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | M. domestica v1.1 | 4203 | Chr09: 4593598-4597800 | |
gene28906-v1.0-hybrid | (1 of 2) PF00078//PF00665//PF03732//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retrotransposon gag protein (Retrotrans_gag) // Retroviral aspartyl protease (RVP_2) | F. vesca v2.0.a2 | 4530 | Fvb3: 15616085-15620614 | |
gene24242-v1.0-hybrid | (1 of 2) PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) | F. vesca v2.0.a2 | 2442 | Fvb4: 8684604-8687045 | |
gene02216-v1.0-hybrid | (1 of 1) PF00078//PF03732//PF13650 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Retrotransposon gag protein (Retrotrans_gag) // Aspartyl protease (Asp_protease_2) | F. vesca v2.0.a2 | 2637 | Fvb5: 16086471-16089107 |
32 Members
Protein Name | Organism Name | Cluster ID | Cluster Name | Same Organism Count | Method ID | Method Name |
---|---|---|---|---|---|---|
Cucsa.023240.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.027470.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.058600.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.108550.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.212270.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.235840.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.249330.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.316910.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.317590.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.383100.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
gene10543-v1.0-hybrid.t1 | F. vesca v2.0.a2 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 5 | 5265 | Fabidae |
gene02216-v1.0-hybrid.t1 | F. vesca v2.0.a2 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 5 | 5265 | Fabidae |
gene36630-v2.0.a2-hybrid.t1 | F. vesca v2.0.a2 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 5 | 5265 | Fabidae |
Cucsa.156090.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.334140.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.369450.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.369460.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.031240.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.212990.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.213260.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.273890.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.079650.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.265940.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.355910.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.054680.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.316790.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.315450.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
Cucsa.315850.1 | C. sativus v1.0 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 25 | 5265 | Fabidae |
MD15G1166500 | M. domestica v1.1 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 2 | 5265 | Fabidae |
MD09G1067600 | M. domestica v1.1 | 122237441 | PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) | 2 | 5265 | Fabidae |