Gene : Medtr8g465910 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR12313//PTHR12313:SF5 - RNF5 Description:  E3 ubiquitin-protein ligase RMA1H1-like protein
Genomic Order:  2779 Name:  ? Medtr8g465910
Secondary Identifier:  ? PAC:31070195
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g465910 0.5kb upstream 0.5kb upstream 3484   true chr8: 23514789-23518272 Medicago truncatula
Medtr8g465910 0.5kb upstream 0.5kb upstream 500   false chr8: 23517773-23518272 Medicago truncatula
Medtr8g465910 0.5kb downstream 0.5kb downstream 3484   true chr8: 23514289-23517772 Medicago truncatula
Medtr8g465910 0.5kb downstream 0.5kb downstream 500   false chr8: 23514289-23514788 Medicago truncatula
Medtr8g465910 1.0kb upstream 1.0kb upstream 3984   true chr8: 23514789-23518772 Medicago truncatula
Medtr8g465910 1.0kb upstream 1.0kb upstream 1000   false chr8: 23517773-23518772 Medicago truncatula
Medtr8g465910 1.0kb downstream 1.0kb downstream 3984   true chr8: 23513789-23517772 Medicago truncatula
Medtr8g465910 1.0kb downstream 1.0kb downstream 1000   false chr8: 23513789-23514788 Medicago truncatula
Medtr8g465910 2.0kb upstream 2.0kb upstream 4984   true chr8: 23514789-23519772 Medicago truncatula
Medtr8g465910 2.0kb upstream 2.0kb upstream 2000   false chr8: 23517773-23519772 Medicago truncatula
Medtr8g465910 2.0kb downstream 2.0kb downstream 4984   true chr8: 23512789-23517772 Medicago truncatula
Medtr8g465910 2.0kb downstream 2.0kb downstream 2000   false chr8: 23512789-23514788 Medicago truncatula
Medtr8g465910 5.0kb upstream 5.0kb upstream 7984   true chr8: 23514789-23522772 Medicago truncatula
Medtr8g465910 5.0kb upstream 5.0kb upstream 5000   false chr8: 23517773-23522772 Medicago truncatula
Medtr8g465910 5.0kb downstream 5.0kb downstream 7984   true chr8: 23509789-23517772 Medicago truncatula
Medtr8g465910 5.0kb downstream 5.0kb downstream 5000   false chr8: 23509789-23514788 Medicago truncatula
Medtr8g465910 10.0kb upstream 10.0kb upstream 12984   true chr8: 23514789-23527772 Medicago truncatula
Medtr8g465910 10.0kb upstream 10.0kb upstream 10000   false chr8: 23517773-23527772 Medicago truncatula
Medtr8g465910 10.0kb downstream 10.0kb downstream 12984   true chr8: 23504789-23517772 Medicago truncatula
Medtr8g465910 10.0kb downstream 10.0kb downstream 10000   false chr8: 23504789-23514788 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308246 5265 Fabidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 78.93     High  
cufflinks 111.806     High  
cufflinks 139.469     High High
cufflinks 56.214     High Low
cufflinks 92.093     High  
cufflinks 51.925     High Low
cufflinks 138.735     High High
cufflinks 143.301     High High
cufflinks 76.156     High  

0 Strain