Gene : Medtr8g106170 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR15316 - SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED Description:  SWAP (suppressor-of-white-APricot)/surp domain protein
Genomic Order:  5679 Name:  ? Medtr8g106170
Secondary Identifier:  ? PAC:31074665
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g106170 0.5kb upstream 0.5kb upstream 5831   true chr8: 44841526-44847356 Medicago truncatula
Medtr8g106170 0.5kb upstream 0.5kb upstream 500   false chr8: 44841526-44842025 Medicago truncatula
Medtr8g106170 0.5kb downstream 0.5kb downstream 5831   true chr8: 44842026-44847856 Medicago truncatula
Medtr8g106170 0.5kb downstream 0.5kb downstream 500   false chr8: 44847357-44847856 Medicago truncatula
Medtr8g106170 1.0kb upstream 1.0kb upstream 6331   true chr8: 44841026-44847356 Medicago truncatula
Medtr8g106170 1.0kb upstream 1.0kb upstream 1000   false chr8: 44841026-44842025 Medicago truncatula
Medtr8g106170 1.0kb downstream 1.0kb downstream 6331   true chr8: 44842026-44848356 Medicago truncatula
Medtr8g106170 1.0kb downstream 1.0kb downstream 1000   false chr8: 44847357-44848356 Medicago truncatula
Medtr8g106170 2.0kb upstream 2.0kb upstream 7331   true chr8: 44840026-44847356 Medicago truncatula
Medtr8g106170 2.0kb upstream 2.0kb upstream 2000   false chr8: 44840026-44842025 Medicago truncatula
Medtr8g106170 2.0kb downstream 2.0kb downstream 7331   true chr8: 44842026-44849356 Medicago truncatula
Medtr8g106170 2.0kb downstream 2.0kb downstream 2000   false chr8: 44847357-44849356 Medicago truncatula
Medtr8g106170 5.0kb upstream 5.0kb upstream 10331   true chr8: 44837026-44847356 Medicago truncatula
Medtr8g106170 5.0kb upstream 5.0kb upstream 5000   false chr8: 44837026-44842025 Medicago truncatula
Medtr8g106170 5.0kb downstream 5.0kb downstream 10331   true chr8: 44842026-44852356 Medicago truncatula
Medtr8g106170 5.0kb downstream 5.0kb downstream 5000   false chr8: 44847357-44852356 Medicago truncatula
Medtr8g106170 10.0kb upstream 10.0kb upstream 15331   true chr8: 44832026-44847356 Medicago truncatula
Medtr8g106170 10.0kb upstream 10.0kb upstream 10000   false chr8: 44832026-44842025 Medicago truncatula
Medtr8g106170 10.0kb downstream 10.0kb downstream 15331   true chr8: 44842026-44857356 Medicago truncatula
Medtr8g106170 10.0kb downstream 10.0kb downstream 10000   false chr8: 44847357-44857356 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041332 5273 Angiosperm View MSA
122301148 5265 Fabidae View MSA
124066763 5270 Rosid View MSA
123748218 5271 Pentapetalae View MSA
122792189 5272 Eudicot View MSA
121344762 5274 Embryophyte View MSA
123425409 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.246        
cufflinks 4.319        
cufflinks 3.864        
cufflinks 4.379        
cufflinks 4.558        
cufflinks 2.438       Low
cufflinks 3.716        
cufflinks 3.625        
cufflinks 4.468        

0 Strain