Gene : evm_27.TU.AmTr_v1.0_scaffold00058.144 A. trichopoda v1.0
Defline:  (1 of 1) PTHR30603//PTHR30603:SF18 - RNA POLYMERASE SIGMA FACTOR RPO Genomic Order:  141
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00058.144 Secondary Identifier:  ? PAC:31559377
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00058.144 0.5kb upstream 0.5kb upstream 15108 true AmTr_v1.0_scaffold00058: 2530851-2545958 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00058: 2545459-2545958 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 0.5kb downstream 0.5kb downstream 15108 true AmTr_v1.0_scaffold00058: 2530351-2545458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00058: 2530351-2530850 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 1.0kb upstream 1.0kb upstream 15608 true AmTr_v1.0_scaffold00058: 2530851-2546458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00058: 2545459-2546458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 1.0kb downstream 1.0kb downstream 15608 true AmTr_v1.0_scaffold00058: 2529851-2545458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00058: 2529851-2530850 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 2.0kb upstream 2.0kb upstream 16608 true AmTr_v1.0_scaffold00058: 2530851-2547458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00058: 2545459-2547458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 2.0kb downstream 2.0kb downstream 16608 true AmTr_v1.0_scaffold00058: 2528851-2545458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00058: 2528851-2530850 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 5.0kb upstream 5.0kb upstream 19608 true AmTr_v1.0_scaffold00058: 2530851-2550458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00058: 2545459-2550458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 5.0kb downstream 5.0kb downstream 19608 true AmTr_v1.0_scaffold00058: 2525851-2545458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00058: 2525851-2530850 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 10.0kb upstream 10.0kb upstream 24608 true AmTr_v1.0_scaffold00058: 2530851-2555458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00058: 2545459-2555458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 10.0kb downstream 10.0kb downstream 24608 true AmTr_v1.0_scaffold00058: 2520851-2545458 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00058.144 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00058: 2520851-2530850 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122046623 5273 Angiosperm View MSA
121350815 5274 Embryophyte View MSA
123425961 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain