Gene : orange1.1g011550m.g C. sinensis v1.1
Defline:  (1 of 1) PTHR33970:SF1 - VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTIC Genomic Order:  12
Name:  ? orange1.1g011550m.g Secondary Identifier:  ? PAC:18125593
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csinensis CAROTENOID-PWY Citrus sinensis pathologic  
Csinensis PWY-5945 Citrus sinensis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
orange1.1g011550m.g 0.5kb upstream 0.5kb upstream 5604 true scaffold00375: 86171-91774 Citrus sinensis
orange1.1g011550m.g 0.5kb upstream 0.5kb upstream 500 false scaffold00375: 91275-91774 Citrus sinensis
orange1.1g011550m.g 0.5kb downstream 0.5kb downstream 5604 true scaffold00375: 85671-91274 Citrus sinensis
orange1.1g011550m.g 0.5kb downstream 0.5kb downstream 500 false scaffold00375: 85671-86170 Citrus sinensis
orange1.1g011550m.g 1.0kb upstream 1.0kb upstream 6104 true scaffold00375: 86171-92274 Citrus sinensis
orange1.1g011550m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold00375: 91275-92274 Citrus sinensis
orange1.1g011550m.g 1.0kb downstream 1.0kb downstream 6104 true scaffold00375: 85171-91274 Citrus sinensis
orange1.1g011550m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold00375: 85171-86170 Citrus sinensis
orange1.1g011550m.g 2.0kb upstream 2.0kb upstream 7104 true scaffold00375: 86171-93274 Citrus sinensis
orange1.1g011550m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold00375: 91275-93274 Citrus sinensis
orange1.1g011550m.g 2.0kb downstream 2.0kb downstream 7104 true scaffold00375: 84171-91274 Citrus sinensis
orange1.1g011550m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold00375: 84171-86170 Citrus sinensis
orange1.1g011550m.g 5.0kb upstream 5.0kb upstream 10104 true scaffold00375: 86171-96274 Citrus sinensis
orange1.1g011550m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold00375: 91275-96274 Citrus sinensis
orange1.1g011550m.g 5.0kb downstream 5.0kb downstream 10104 true scaffold00375: 81171-91274 Citrus sinensis
orange1.1g011550m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold00375: 81171-86170 Citrus sinensis
orange1.1g011550m.g 10.0kb upstream 10.0kb upstream 15104 true scaffold00375: 86171-101274 Citrus sinensis
orange1.1g011550m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold00375: 91275-101274 Citrus sinensis
orange1.1g011550m.g 10.0kb downstream 10.0kb downstream 15104 true scaffold00375: 76171-91274 Citrus sinensis
orange1.1g011550m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold00375: 76171-86170 Citrus sinensis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124344334 5266 SBM View MSA
124238340 5268 Malvidae View MSA
124063145 5270 Rosid View MSA
123739304 5271 Pentapetalae View MSA
122790516 5272 Eudicot View MSA
122041813 5273 Angiosperm View MSA
121344367 5274 Embryophyte View MSA
123425421 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain