Gene : Eucgr.A00998 E. grandis v2.0
Defline:  (1 of 3) PTHR12565:SF178 - TRANSCRIPTION FACTOR PIF3 Genomic Order:  1418
Name:  ? Eucgr.A00998 Secondary Identifier:  ? PAC:32048872
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A00998 0.5kb upstream 0.5kb upstream 3710 true Chr01: 30045532-30049241 Eucalyptus grandis
Eucgr.A00998 0.5kb upstream 0.5kb upstream 500 false Chr01: 30048742-30049241 Eucalyptus grandis
Eucgr.A00998 0.5kb downstream 0.5kb downstream 3710 true Chr01: 30045032-30048741 Eucalyptus grandis
Eucgr.A00998 0.5kb downstream 0.5kb downstream 500 false Chr01: 30045032-30045531 Eucalyptus grandis
Eucgr.A00998 1.0kb upstream 1.0kb upstream 4210 true Chr01: 30045532-30049741 Eucalyptus grandis
Eucgr.A00998 1.0kb upstream 1.0kb upstream 1000 false Chr01: 30048742-30049741 Eucalyptus grandis
Eucgr.A00998 1.0kb downstream 1.0kb downstream 4210 true Chr01: 30044532-30048741 Eucalyptus grandis
Eucgr.A00998 1.0kb downstream 1.0kb downstream 1000 false Chr01: 30044532-30045531 Eucalyptus grandis
Eucgr.A00998 2.0kb upstream 2.0kb upstream 5210 true Chr01: 30045532-30050741 Eucalyptus grandis
Eucgr.A00998 2.0kb upstream 2.0kb upstream 2000 false Chr01: 30048742-30050741 Eucalyptus grandis
Eucgr.A00998 2.0kb downstream 2.0kb downstream 5210 true Chr01: 30043532-30048741 Eucalyptus grandis
Eucgr.A00998 2.0kb downstream 2.0kb downstream 2000 false Chr01: 30043532-30045531 Eucalyptus grandis
Eucgr.A00998 5.0kb upstream 5.0kb upstream 8210 true Chr01: 30045532-30053741 Eucalyptus grandis
Eucgr.A00998 5.0kb upstream 5.0kb upstream 5000 false Chr01: 30048742-30053741 Eucalyptus grandis
Eucgr.A00998 5.0kb downstream 5.0kb downstream 8210 true Chr01: 30040532-30048741 Eucalyptus grandis
Eucgr.A00998 5.0kb downstream 5.0kb downstream 5000 false Chr01: 30040532-30045531 Eucalyptus grandis
Eucgr.A00998 10.0kb upstream 10.0kb upstream 13210 true Chr01: 30045532-30058741 Eucalyptus grandis
Eucgr.A00998 10.0kb upstream 10.0kb upstream 10000 false Chr01: 30048742-30058741 Eucalyptus grandis
Eucgr.A00998 10.0kb downstream 10.0kb downstream 13210 true Chr01: 30035532-30048741 Eucalyptus grandis
Eucgr.A00998 10.0kb downstream 10.0kb downstream 10000 false Chr01: 30035532-30045531 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124075094 5270 Rosid View MSA
123752650 5271 Pentapetalae View MSA
122774700 5272 Eudicot View MSA
122048181 5273 Angiosperm View MSA
121348763 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.7899 0.0 108.692 High  
cufflinks 14.3857 0.0 32.5933    
cufflinks 22.1403 0.0 50.6917    
cufflinks 3.83251 0.0 10.414   Low
cufflinks 9.49065 0.0 22.5466    
cufflinks 81.252 0.0 195.622 High High

0 Strain