Gene : Eucgr.A02579 E. grandis v2.0
Defline:  (1 of 9) PTHR22849:SF38 - E3 UBIQUITIN-PROTEIN LIGASE PUB22-RELATED Genomic Order:  2311
Name:  ? Eucgr.A02579 Secondary Identifier:  ? PAC:32049166
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-7511 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A02579 0.5kb upstream 0.5kb upstream 1779 true Chr01: 40958789-40960567 Eucalyptus grandis
Eucgr.A02579 0.5kb upstream 0.5kb upstream 500 false Chr01: 40960068-40960567 Eucalyptus grandis
Eucgr.A02579 0.5kb downstream 0.5kb downstream 1779 true Chr01: 40958289-40960067 Eucalyptus grandis
Eucgr.A02579 0.5kb downstream 0.5kb downstream 500 false Chr01: 40958289-40958788 Eucalyptus grandis
Eucgr.A02579 1.0kb upstream 1.0kb upstream 2279 true Chr01: 40958789-40961067 Eucalyptus grandis
Eucgr.A02579 1.0kb upstream 1.0kb upstream 1000 false Chr01: 40960068-40961067 Eucalyptus grandis
Eucgr.A02579 1.0kb downstream 1.0kb downstream 2279 true Chr01: 40957789-40960067 Eucalyptus grandis
Eucgr.A02579 1.0kb downstream 1.0kb downstream 1000 false Chr01: 40957789-40958788 Eucalyptus grandis
Eucgr.A02579 2.0kb upstream 2.0kb upstream 3279 true Chr01: 40958789-40962067 Eucalyptus grandis
Eucgr.A02579 2.0kb upstream 2.0kb upstream 2000 false Chr01: 40960068-40962067 Eucalyptus grandis
Eucgr.A02579 2.0kb downstream 2.0kb downstream 3279 true Chr01: 40956789-40960067 Eucalyptus grandis
Eucgr.A02579 2.0kb downstream 2.0kb downstream 2000 false Chr01: 40956789-40958788 Eucalyptus grandis
Eucgr.A02579 5.0kb upstream 5.0kb upstream 6279 true Chr01: 40958789-40965067 Eucalyptus grandis
Eucgr.A02579 5.0kb upstream 5.0kb upstream 5000 false Chr01: 40960068-40965067 Eucalyptus grandis
Eucgr.A02579 5.0kb downstream 5.0kb downstream 6279 true Chr01: 40953789-40960067 Eucalyptus grandis
Eucgr.A02579 5.0kb downstream 5.0kb downstream 5000 false Chr01: 40953789-40958788 Eucalyptus grandis
Eucgr.A02579 10.0kb upstream 10.0kb upstream 11279 true Chr01: 40958789-40970067 Eucalyptus grandis
Eucgr.A02579 10.0kb upstream 10.0kb upstream 10000 false Chr01: 40960068-40970067 Eucalyptus grandis
Eucgr.A02579 10.0kb downstream 10.0kb downstream 11279 true Chr01: 40948789-40960067 Eucalyptus grandis
Eucgr.A02579 10.0kb downstream 10.0kb downstream 10000 false Chr01: 40948789-40958788 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068371 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.00193312 0.0 0.052535 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.115314 0.0 0.515931 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain