Gene : Eucgr.D01094 E. grandis v2.0
Defline:  (1 of 1) PTHR30603//PTHR30603:SF25 - RNA POLYMERASE SIGMA FACTOR RPO Genomic Order:  1075
Name:  ? Eucgr.D01094 Secondary Identifier:  ? PAC:32050379
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.D01094 0.5kb upstream 0.5kb upstream 6535 true Chr04: 23168617-23175151 Eucalyptus grandis
Eucgr.D01094 0.5kb upstream 0.5kb upstream 500 false Chr04: 23168617-23169116 Eucalyptus grandis
Eucgr.D01094 0.5kb downstream 0.5kb downstream 6535 true Chr04: 23169117-23175651 Eucalyptus grandis
Eucgr.D01094 0.5kb downstream 0.5kb downstream 500 false Chr04: 23175152-23175651 Eucalyptus grandis
Eucgr.D01094 1.0kb upstream 1.0kb upstream 7035 true Chr04: 23168117-23175151 Eucalyptus grandis
Eucgr.D01094 1.0kb upstream 1.0kb upstream 1000 false Chr04: 23168117-23169116 Eucalyptus grandis
Eucgr.D01094 1.0kb downstream 1.0kb downstream 7035 true Chr04: 23169117-23176151 Eucalyptus grandis
Eucgr.D01094 1.0kb downstream 1.0kb downstream 1000 false Chr04: 23175152-23176151 Eucalyptus grandis
Eucgr.D01094 2.0kb upstream 2.0kb upstream 8035 true Chr04: 23167117-23175151 Eucalyptus grandis
Eucgr.D01094 2.0kb upstream 2.0kb upstream 2000 false Chr04: 23167117-23169116 Eucalyptus grandis
Eucgr.D01094 2.0kb downstream 2.0kb downstream 8035 true Chr04: 23169117-23177151 Eucalyptus grandis
Eucgr.D01094 2.0kb downstream 2.0kb downstream 2000 false Chr04: 23175152-23177151 Eucalyptus grandis
Eucgr.D01094 5.0kb upstream 5.0kb upstream 11035 true Chr04: 23164117-23175151 Eucalyptus grandis
Eucgr.D01094 5.0kb upstream 5.0kb upstream 5000 false Chr04: 23164117-23169116 Eucalyptus grandis
Eucgr.D01094 5.0kb downstream 5.0kb downstream 11035 true Chr04: 23169117-23180151 Eucalyptus grandis
Eucgr.D01094 5.0kb downstream 5.0kb downstream 5000 false Chr04: 23175152-23180151 Eucalyptus grandis
Eucgr.D01094 10.0kb upstream 10.0kb upstream 16035 true Chr04: 23159117-23175151 Eucalyptus grandis
Eucgr.D01094 10.0kb upstream 10.0kb upstream 10000 false Chr04: 23159117-23169116 Eucalyptus grandis
Eucgr.D01094 10.0kb downstream 10.0kb downstream 16035 true Chr04: 23169117-23185151 Eucalyptus grandis
Eucgr.D01094 10.0kb downstream 10.0kb downstream 10000 false Chr04: 23175152-23185151 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065306 5270 Rosid View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.0835 0.0 44.4167    
cufflinks 1.33091 0.0 3.57973    
cufflinks 7.96602 0.0 18.1408    
cufflinks 1.03707 0.0 2.85109    
cufflinks 1.45858 0.0 3.88789    
cufflinks 43.9186 0.0 98.5447 High High

0 Strain