Gene : Eucgr.G01188 E. grandis v2.0
Defline:  (1 of 1) PTHR31412:SF2 - ZINC METALLOPEPTIDASE EGY3, CHLOROPLASTIC-RELATED Genomic Order:  790
Name:  ? Eucgr.G01188 Secondary Identifier:  ? PAC:32071853
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.G01188 0.5kb upstream 0.5kb upstream 4968 true Chr07: 18141790-18146757 Eucalyptus grandis
Eucgr.G01188 0.5kb upstream 0.5kb upstream 500 false Chr07: 18146258-18146757 Eucalyptus grandis
Eucgr.G01188 0.5kb downstream 0.5kb downstream 4968 true Chr07: 18141290-18146257 Eucalyptus grandis
Eucgr.G01188 0.5kb downstream 0.5kb downstream 500 false Chr07: 18141290-18141789 Eucalyptus grandis
Eucgr.G01188 1.0kb upstream 1.0kb upstream 5468 true Chr07: 18141790-18147257 Eucalyptus grandis
Eucgr.G01188 1.0kb upstream 1.0kb upstream 1000 false Chr07: 18146258-18147257 Eucalyptus grandis
Eucgr.G01188 1.0kb downstream 1.0kb downstream 5468 true Chr07: 18140790-18146257 Eucalyptus grandis
Eucgr.G01188 1.0kb downstream 1.0kb downstream 1000 false Chr07: 18140790-18141789 Eucalyptus grandis
Eucgr.G01188 2.0kb upstream 2.0kb upstream 6468 true Chr07: 18141790-18148257 Eucalyptus grandis
Eucgr.G01188 2.0kb upstream 2.0kb upstream 2000 false Chr07: 18146258-18148257 Eucalyptus grandis
Eucgr.G01188 2.0kb downstream 2.0kb downstream 6468 true Chr07: 18139790-18146257 Eucalyptus grandis
Eucgr.G01188 2.0kb downstream 2.0kb downstream 2000 false Chr07: 18139790-18141789 Eucalyptus grandis
Eucgr.G01188 5.0kb upstream 5.0kb upstream 9468 true Chr07: 18141790-18151257 Eucalyptus grandis
Eucgr.G01188 5.0kb upstream 5.0kb upstream 5000 false Chr07: 18146258-18151257 Eucalyptus grandis
Eucgr.G01188 5.0kb downstream 5.0kb downstream 9468 true Chr07: 18136790-18146257 Eucalyptus grandis
Eucgr.G01188 5.0kb downstream 5.0kb downstream 5000 false Chr07: 18136790-18141789 Eucalyptus grandis
Eucgr.G01188 10.0kb upstream 10.0kb upstream 14468 true Chr07: 18141790-18156257 Eucalyptus grandis
Eucgr.G01188 10.0kb upstream 10.0kb upstream 10000 false Chr07: 18146258-18156257 Eucalyptus grandis
Eucgr.G01188 10.0kb downstream 10.0kb downstream 14468 true Chr07: 18131790-18146257 Eucalyptus grandis
Eucgr.G01188 10.0kb downstream 10.0kb downstream 10000 false Chr07: 18131790-18141789 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067271 5270 Rosid View MSA
123738003 5271 Pentapetalae View MSA
122792522 5272 Eudicot View MSA
122042498 5273 Angiosperm View MSA
121347143 5274 Embryophyte View MSA
123425233 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.52737 0.0 21.9241   Low
cufflinks 25.5223 0.0 58.3025    
cufflinks 14.9826 0.0 37.1679    
cufflinks 14.7586 0.0 36.5463    
cufflinks 52.4406 0.0 137.915 High  
cufflinks 72.6767 0.0 169.652 High High

0 Strain