Gene : Eucgr.L02260 E. grandis v2.0
Defline:  (1 of 9) PTHR23079:SF9 - RNA-DEPENDENT RNA POLYMERASE 1 Genomic Order:  1
Name:  ? Eucgr.L02260 Secondary Identifier:  ? PAC:32062367
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.L02260 0.5kb upstream 0.5kb upstream 3889 true scaffold_720: 1-3889 Eucalyptus grandis
Eucgr.L02260 0.5kb upstream 0.5kb upstream 46 false scaffold_720: 1-46 Eucalyptus grandis
Eucgr.L02260 0.5kb downstream 0.5kb downstream 4343 true scaffold_720: 47-4389 Eucalyptus grandis
Eucgr.L02260 0.5kb downstream 0.5kb downstream 500 false scaffold_720: 3890-4389 Eucalyptus grandis
Eucgr.L02260 1.0kb upstream 1.0kb upstream 3889 true scaffold_720: 1-3889 Eucalyptus grandis
Eucgr.L02260 1.0kb upstream 1.0kb upstream 46 false scaffold_720: 1-46 Eucalyptus grandis
Eucgr.L02260 1.0kb downstream 1.0kb downstream 4843 true scaffold_720: 47-4889 Eucalyptus grandis
Eucgr.L02260 1.0kb downstream 1.0kb downstream 1000 false scaffold_720: 3890-4889 Eucalyptus grandis
Eucgr.L02260 2.0kb upstream 2.0kb upstream 3889 true scaffold_720: 1-3889 Eucalyptus grandis
Eucgr.L02260 2.0kb upstream 2.0kb upstream 46 false scaffold_720: 1-46 Eucalyptus grandis
Eucgr.L02260 2.0kb downstream 2.0kb downstream 5843 true scaffold_720: 47-5889 Eucalyptus grandis
Eucgr.L02260 2.0kb downstream 2.0kb downstream 2000 false scaffold_720: 3890-5889 Eucalyptus grandis
Eucgr.L02260 5.0kb upstream 5.0kb upstream 3889 true scaffold_720: 1-3889 Eucalyptus grandis
Eucgr.L02260 5.0kb upstream 5.0kb upstream 46 false scaffold_720: 1-46 Eucalyptus grandis
Eucgr.L02260 5.0kb downstream 5.0kb downstream 8843 true scaffold_720: 47-8889 Eucalyptus grandis
Eucgr.L02260 5.0kb downstream 5.0kb downstream 5000 false scaffold_720: 3890-8889 Eucalyptus grandis
Eucgr.L02260 10.0kb upstream 10.0kb upstream 3889 true scaffold_720: 1-3889 Eucalyptus grandis
Eucgr.L02260 10.0kb upstream 10.0kb upstream 46 false scaffold_720: 1-46 Eucalyptus grandis
Eucgr.L02260 10.0kb downstream 10.0kb downstream 13843 true scaffold_720: 47-13889 Eucalyptus grandis
Eucgr.L02260 10.0kb downstream 10.0kb downstream 10000 false scaffold_720: 3890-13889 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124050822 5270 Rosid View MSA
123752294 5271 Pentapetalae View MSA
122797649 5272 Eudicot View MSA
122047757 5273 Angiosperm View MSA
121351040 5274 Embryophyte View MSA
123428546 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.674013 0.0 2.12453    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.518953 0.0 1.68353    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain