Protein Domain : IPR009061

Type:  Domain Name:  Putative DNA-binding domain
Description:  A putative DNA-binding domain with a conserved structure is found in several different protein families. The core structure of the domain consists of a three-helical fold that is architecturally similar to that of the "winged-helix" fold, but is topologically distinct. Representatives of this domain can be found in domains B1 and B5 from the beta subunit of phenylalanine-tRNA synthetases [], the C-terminal region of the DNA/RPA-binding domain of the DNA excision repair factor XPA [], the N-terminal domain of the transcriptional activators BmrR and MtaN [], the most conserved domain of the retinal development protein Dachshund [], and the DNA-binding domain of the gpNU1 subunit from the bacteriophage lambda viral packing protein terminase []. Short Name:  DNA-bd_dom_put

7 Child Features

DB identifier Type Name
IPR022656 Domain XPA C- terminal
IPR005147 Domain tRNA synthetase, B5-domain
IPR003380 Domain Transforming protein Ski
IPR012884 Domain Excisionase-like
IPR000551 Domain MerR-type HTH domain
IPR010093 Domain SinI-like, DNA-binding domain
IPR003314 Domain Mu-type HTH domain

1 Contains

DB identifier Type Name
IPR022658 Conserved_site XPA, conserved site

1 Cross References

Identifier
SSF46955

5 Found Ins

DB identifier Type Name
IPR004531 Family Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic
IPR004532 Family Phenylalanine-tRNA ligase, class IIc, beta subunit
IPR000465 Family XPA
IPR010749 Family Protein of unknown function DUF1323
IPR010906 Family Bacteriophage lambda, Nu1, terminase small subunit

0 GO Annotation

0 Ontology Annotations

0 Parent Features

582 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
143204 D8R2W3 PAC:15414016 Selaginella moellendorffii 586  
evm.model.supercontig_271.5 PAC:16415743 Carica papaya 578  
30075.m001188 B9SAX6 PAC:16817041 Ricinus communis 593  
32532.m000022 B9TH58 PAC:16825468 Ricinus communis 109  
38726.m000021 B9TJQ3 PAC:16827136 Ricinus communis 306  
43646.m000009 PAC:16827628 Ricinus communis 55  
48361.m000023 B9TKV2 PAC:16828081 Ricinus communis 176  
50130.m000034 B9TL11 PAC:16828233 Ricinus communis 68  
57168.m000016 B9TP03 PAC:16829020 Ricinus communis 125  
28809.m000038 B9T9G4 PAC:16801719 Ricinus communis 421  
27669.m000056 B9T8Z7 PAC:16798929 Ricinus communis 363  
27666.m000041 B9TC78 PAC:16798921 Ricinus communis 205  
27851.m000040 B9TBL7 PAC:16799337 Ricinus communis 54  
Cucsa.198410.3 PAC:16968591 Cucumis sativus 525  
Cucsa.198410.4 PAC:16968592 Cucumis sativus 486  
Cucsa.198410.2 A0A0A0LPD2 PAC:16968590 Cucumis sativus 591  
Cucsa.198410.1 A0A0A0LPD2 PAC:16968589 Cucumis sativus 591  
orange1.1g009703m A0A067GIP5 PAC:18114481 Citrus sinensis 528  
orange1.1g007872m A0A067GIY6 PAC:18114480 Citrus sinensis 586  
orange1.1g007706m A0A067G9J2 PAC:18114477 Citrus sinensis 592  
orange1.1g007714m A0A067G9J2 PAC:18114478 Citrus sinensis 592  
orange1.1g007710m A0A067G9J2 PAC:18114479 Citrus sinensis 592  
AT1G72550.2 F4IDD6 PAC:19649852 Arabidopsis thaliana 584  
AT1G72550.1 Q9SGE9 PAC:19649851 Arabidopsis thaliana 598  
Thhalv10007156m V4L205 PAC:20187895 Eutrema salsugineum 591  
Thhalv10007155m V4L205 PAC:20187896 Eutrema salsugineum 591  
Ciclev10014690m V4W7L5 PAC:20817420 Citrus clementina 592  
Lus10009382 PAC:23142622 Linum usitatissimum 608  
Lus10020531 PAC:23172340 Linum usitatissimum 596  
Potri.018G070200.1 B9N5I6 PAC:27008900 Populus trichocarpa 595  

5 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11679717
            10563794
            11201751
            12057194
            12049735