Gene : Seita.1G220900 S. italica v2.2
Defline:  (1 of 1) PTHR18937//PTHR18937:SF272 - STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER Genomic Order:  2209
Name:  ? Seita.1G220900 Secondary Identifier:  ? PAC:32695314
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G220900 0.5kb upstream 0.5kb upstream 8268 true scaffold_1: 29968209-29976476 Setaria italica
Seita.1G220900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 29968209-29968708 Setaria italica
Seita.1G220900 0.5kb downstream 0.5kb downstream 8268 true scaffold_1: 29968709-29976976 Setaria italica
Seita.1G220900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 29976477-29976976 Setaria italica
Seita.1G220900 1.0kb upstream 1.0kb upstream 8768 true scaffold_1: 29967709-29976476 Setaria italica
Seita.1G220900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 29967709-29968708 Setaria italica
Seita.1G220900 1.0kb downstream 1.0kb downstream 8768 true scaffold_1: 29968709-29977476 Setaria italica
Seita.1G220900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 29976477-29977476 Setaria italica
Seita.1G220900 2.0kb upstream 2.0kb upstream 9768 true scaffold_1: 29966709-29976476 Setaria italica
Seita.1G220900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 29966709-29968708 Setaria italica
Seita.1G220900 2.0kb downstream 2.0kb downstream 9768 true scaffold_1: 29968709-29978476 Setaria italica
Seita.1G220900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 29976477-29978476 Setaria italica
Seita.1G220900 5.0kb upstream 5.0kb upstream 12768 true scaffold_1: 29963709-29976476 Setaria italica
Seita.1G220900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 29963709-29968708 Setaria italica
Seita.1G220900 5.0kb downstream 5.0kb downstream 12768 true scaffold_1: 29968709-29981476 Setaria italica
Seita.1G220900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 29976477-29981476 Setaria italica
Seita.1G220900 10.0kb upstream 10.0kb upstream 17768 true scaffold_1: 29958709-29976476 Setaria italica
Seita.1G220900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 29958709-29968708 Setaria italica
Seita.1G220900 10.0kb downstream 10.0kb downstream 17768 true scaffold_1: 29968709-29986476 Setaria italica
Seita.1G220900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 29976477-29986476 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189603 5267 Panicoideae View MSA
124571360 5269 Grass View MSA
122043215 5273 Angiosperm View MSA
121351769 5274 Embryophyte View MSA
123428094 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.747     High  
cufflinks 15.825     High  
cufflinks 16.815     High  
cufflinks 13.271     High  
cufflinks 12.34     High  
cufflinks 13.866     High  
cufflinks 19.277     High  
cufflinks 8.727       Low
cufflinks 11.971        
cufflinks 5.073       Low
cufflinks 16.73     High  
cufflinks 14.742     High  
cufflinks 14.017     High  
cufflinks 17.706     High  
cufflinks 21.481     High High
cufflinks 18.696     High  
cufflinks 10.643        
cufflinks 22.209     High High
cufflinks 13.963     High  
cufflinks 13.717        

0 Strain