Gene : Seita.1G188700 S. italica v2.2
Defline:  (1 of 1) PTHR22849//PTHR22849:SF26 - WDSAM1 PROTEIN Genomic Order:  1887
Name:  ? Seita.1G188700 Secondary Identifier:  ? PAC:32696792
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7511 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G188700 0.5kb upstream 0.5kb upstream 1727 true scaffold_1: 27106338-27108064 Setaria italica
Seita.1G188700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 27107565-27108064 Setaria italica
Seita.1G188700 0.5kb downstream 0.5kb downstream 1727 true scaffold_1: 27105838-27107564 Setaria italica
Seita.1G188700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 27105838-27106337 Setaria italica
Seita.1G188700 1.0kb upstream 1.0kb upstream 2227 true scaffold_1: 27106338-27108564 Setaria italica
Seita.1G188700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 27107565-27108564 Setaria italica
Seita.1G188700 1.0kb downstream 1.0kb downstream 2227 true scaffold_1: 27105338-27107564 Setaria italica
Seita.1G188700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 27105338-27106337 Setaria italica
Seita.1G188700 2.0kb upstream 2.0kb upstream 3227 true scaffold_1: 27106338-27109564 Setaria italica
Seita.1G188700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 27107565-27109564 Setaria italica
Seita.1G188700 2.0kb downstream 2.0kb downstream 3227 true scaffold_1: 27104338-27107564 Setaria italica
Seita.1G188700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 27104338-27106337 Setaria italica
Seita.1G188700 5.0kb upstream 5.0kb upstream 6227 true scaffold_1: 27106338-27112564 Setaria italica
Seita.1G188700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 27107565-27112564 Setaria italica
Seita.1G188700 5.0kb downstream 5.0kb downstream 6227 true scaffold_1: 27101338-27107564 Setaria italica
Seita.1G188700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 27101338-27106337 Setaria italica
Seita.1G188700 10.0kb upstream 10.0kb upstream 11227 true scaffold_1: 27106338-27117564 Setaria italica
Seita.1G188700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 27107565-27117564 Setaria italica
Seita.1G188700 10.0kb downstream 10.0kb downstream 11227 true scaffold_1: 27096338-27107564 Setaria italica
Seita.1G188700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 27096338-27106337 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188628 5267 Panicoideae View MSA
124578185 5269 Grass View MSA
122045522 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.259        
cufflinks 3.833        
cufflinks 1.136       Low
cufflinks 1.564        
cufflinks 2.462        
cufflinks 4.074        
cufflinks 5.141       High
cufflinks 1.49       Low
cufflinks 3.837        
cufflinks 3.849        
cufflinks 4.911       High
cufflinks 1.704        
cufflinks 4.617       High
cufflinks 1.288       Low
cufflinks 5.15       High
cufflinks 2.237        
cufflinks 2.799        
cufflinks 1.256       Low
cufflinks 1.217       Low
cufflinks 5.258       High

0 Strain