Gene : Seita.1G249200 S. italica v2.2
Defline:  (1 of 2) PTHR12313//PTHR12313:SF9 - RNF5 Genomic Order:  2492
Name:  ? Seita.1G249200 Secondary Identifier:  ? PAC:32697824
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G249200 0.5kb upstream 0.5kb upstream 4184 true scaffold_1: 32512575-32516758 Setaria italica
Seita.1G249200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 32516259-32516758 Setaria italica
Seita.1G249200 0.5kb downstream 0.5kb downstream 4184 true scaffold_1: 32512075-32516258 Setaria italica
Seita.1G249200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 32512075-32512574 Setaria italica
Seita.1G249200 1.0kb upstream 1.0kb upstream 4684 true scaffold_1: 32512575-32517258 Setaria italica
Seita.1G249200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 32516259-32517258 Setaria italica
Seita.1G249200 1.0kb downstream 1.0kb downstream 4684 true scaffold_1: 32511575-32516258 Setaria italica
Seita.1G249200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 32511575-32512574 Setaria italica
Seita.1G249200 2.0kb upstream 2.0kb upstream 5684 true scaffold_1: 32512575-32518258 Setaria italica
Seita.1G249200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 32516259-32518258 Setaria italica
Seita.1G249200 2.0kb downstream 2.0kb downstream 5684 true scaffold_1: 32510575-32516258 Setaria italica
Seita.1G249200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 32510575-32512574 Setaria italica
Seita.1G249200 5.0kb upstream 5.0kb upstream 8684 true scaffold_1: 32512575-32521258 Setaria italica
Seita.1G249200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 32516259-32521258 Setaria italica
Seita.1G249200 5.0kb downstream 5.0kb downstream 8684 true scaffold_1: 32507575-32516258 Setaria italica
Seita.1G249200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 32507575-32512574 Setaria italica
Seita.1G249200 10.0kb upstream 10.0kb upstream 13684 true scaffold_1: 32512575-32526258 Setaria italica
Seita.1G249200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 32516259-32526258 Setaria italica
Seita.1G249200 10.0kb downstream 10.0kb downstream 13684 true scaffold_1: 32502575-32516258 Setaria italica
Seita.1G249200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 32502575-32512574 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176448 5267 Panicoideae View MSA
124591154 5269 Grass View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.849        
cufflinks 0.851        
cufflinks 1.005        
cufflinks 0.558        
cufflinks 0.343       Low
cufflinks 1.141        
cufflinks 0.588        
cufflinks 0.45       Low
cufflinks 0.304       Low
cufflinks 1.428       High
cufflinks 0.775        
cufflinks 0.718        
cufflinks 1.396       High
cufflinks 1.834       High
cufflinks 0.725        
cufflinks 1.087        
cufflinks 0.582        
cufflinks 0.897        
cufflinks 0.703        
cufflinks 0.457       Low

0 Strain