Gene : Seita.J018300 S. italica v2.2
Defline:  (1 of 2) PTHR33180:SF4 - PHOTOSYSTEM II CP43 CHLOROPHYLL APOPROTEIN Genomic Order:  57
Name:  ? Seita.J018300 Secondary Identifier:  ? PAC:32706084
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.J018300 0.5kb upstream 0.5kb upstream 1916 true scaffold_14: 90123-92038 Setaria italica
Seita.J018300 0.5kb upstream 0.5kb upstream 500 false scaffold_14: 90123-90622 Setaria italica
Seita.J018300 0.5kb downstream 0.5kb downstream 1916 true scaffold_14: 90623-92538 Setaria italica
Seita.J018300 0.5kb downstream 0.5kb downstream 500 false scaffold_14: 92039-92538 Setaria italica
Seita.J018300 1.0kb upstream 1.0kb upstream 2416 true scaffold_14: 89623-92038 Setaria italica
Seita.J018300 1.0kb upstream 1.0kb upstream 1000 false scaffold_14: 89623-90622 Setaria italica
Seita.J018300 1.0kb downstream 1.0kb downstream 2416 true scaffold_14: 90623-93038 Setaria italica
Seita.J018300 1.0kb downstream 1.0kb downstream 1000 false scaffold_14: 92039-93038 Setaria italica
Seita.J018300 2.0kb upstream 2.0kb upstream 3416 true scaffold_14: 88623-92038 Setaria italica
Seita.J018300 2.0kb upstream 2.0kb upstream 2000 false scaffold_14: 88623-90622 Setaria italica
Seita.J018300 2.0kb downstream 2.0kb downstream 3416 true scaffold_14: 90623-94038 Setaria italica
Seita.J018300 2.0kb downstream 2.0kb downstream 2000 false scaffold_14: 92039-94038 Setaria italica
Seita.J018300 5.0kb upstream 5.0kb upstream 6416 true scaffold_14: 85623-92038 Setaria italica
Seita.J018300 5.0kb upstream 5.0kb upstream 5000 false scaffold_14: 85623-90622 Setaria italica
Seita.J018300 5.0kb downstream 5.0kb downstream 6416 true scaffold_14: 90623-97038 Setaria italica
Seita.J018300 5.0kb downstream 5.0kb downstream 5000 false scaffold_14: 92039-97038 Setaria italica
Seita.J018300 10.0kb upstream 10.0kb upstream 11416 true scaffold_14: 80623-92038 Setaria italica
Seita.J018300 10.0kb upstream 10.0kb upstream 10000 false scaffold_14: 80623-90622 Setaria italica
Seita.J018300 10.0kb downstream 10.0kb downstream 11416 true scaffold_14: 90623-102038 Setaria italica
Seita.J018300 10.0kb downstream 10.0kb downstream 10000 false scaffold_14: 92039-102038 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199893 5267 Panicoideae View MSA
124591124 5269 Grass View MSA
122051576 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121350250 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.159        
cufflinks 2.072        
cufflinks 37.736     High  
cufflinks 29.927     High  
cufflinks 24.741     High  
cufflinks 1.622        
cufflinks 11.684        
cufflinks 8.056        
cufflinks 11.625        
cufflinks 376.183     High High
cufflinks 8.912        
cufflinks 0.149       Low
cufflinks 2.841        
cufflinks 18.247     High  
cufflinks 0.187       Low
cufflinks 10.329        
cufflinks 0.185       Low
cufflinks 5.764        
cufflinks 29.085     High  
cufflinks 0.086     Low Low

0 Strain