Gene : Seita.2G142000 S. italica v2.2
Defline:  (1 of 3) PTHR23002:SF54 - CCHC-TYPE ZINC KNUCKLE PROTEIN-RELATED Genomic Order:  1420
Name:  ? Seita.2G142000 Secondary Identifier:  ? PAC:32721689
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G142000 0.5kb upstream 0.5kb upstream 2255 true scaffold_2: 16914530-16916784 Setaria italica
Seita.2G142000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 16916285-16916784 Setaria italica
Seita.2G142000 0.5kb downstream 0.5kb downstream 2255 true scaffold_2: 16914030-16916284 Setaria italica
Seita.2G142000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 16914030-16914529 Setaria italica
Seita.2G142000 1.0kb upstream 1.0kb upstream 2755 true scaffold_2: 16914530-16917284 Setaria italica
Seita.2G142000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 16916285-16917284 Setaria italica
Seita.2G142000 1.0kb downstream 1.0kb downstream 2755 true scaffold_2: 16913530-16916284 Setaria italica
Seita.2G142000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 16913530-16914529 Setaria italica
Seita.2G142000 2.0kb upstream 2.0kb upstream 3755 true scaffold_2: 16914530-16918284 Setaria italica
Seita.2G142000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 16916285-16918284 Setaria italica
Seita.2G142000 2.0kb downstream 2.0kb downstream 3755 true scaffold_2: 16912530-16916284 Setaria italica
Seita.2G142000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 16912530-16914529 Setaria italica
Seita.2G142000 5.0kb upstream 5.0kb upstream 6755 true scaffold_2: 16914530-16921284 Setaria italica
Seita.2G142000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 16916285-16921284 Setaria italica
Seita.2G142000 5.0kb downstream 5.0kb downstream 6755 true scaffold_2: 16909530-16916284 Setaria italica
Seita.2G142000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 16909530-16914529 Setaria italica
Seita.2G142000 10.0kb upstream 10.0kb upstream 11755 true scaffold_2: 16914530-16926284 Setaria italica
Seita.2G142000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 16916285-16926284 Setaria italica
Seita.2G142000 10.0kb downstream 10.0kb downstream 11755 true scaffold_2: 16904530-16916284 Setaria italica
Seita.2G142000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 16904530-16914529 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993260 5273 Angiosperm View MSA
122192136 5267 Panicoideae View MSA
124576507 5269 Grass View MSA
121263553 5274 Embryophyte View MSA
123302084 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.384        
cufflinks 0.327        
cufflinks 0.435        
cufflinks 0.218        
cufflinks 0.239        
cufflinks 0.606        
cufflinks 0.355        
cufflinks 0.224        
cufflinks 0.349        
cufflinks 0.062     Low Low
cufflinks 0.146       Low
cufflinks 0.514        
cufflinks 0.479        
cufflinks 0.423        
cufflinks 1.363       High
cufflinks 0.296        
cufflinks 0.777       High
cufflinks 0.633        
cufflinks 0.25        
cufflinks 0.739       High

0 Strain