Gene : Seita.2G179200 S. italica v2.2
Defline:  (1 of 1) PTHR11864 - PRE-MRNA-PROCESSING PROTEIN PRP40 Genomic Order:  1792
Name:  ? Seita.2G179200 Secondary Identifier:  ? PAC:32718245
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G179200 0.5kb upstream 0.5kb upstream 14264 true scaffold_2: 26991033-27005296 Setaria italica
Seita.2G179200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 27004797-27005296 Setaria italica
Seita.2G179200 0.5kb downstream 0.5kb downstream 14264 true scaffold_2: 26990533-27004796 Setaria italica
Seita.2G179200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 26990533-26991032 Setaria italica
Seita.2G179200 1.0kb upstream 1.0kb upstream 14764 true scaffold_2: 26991033-27005796 Setaria italica
Seita.2G179200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 27004797-27005796 Setaria italica
Seita.2G179200 1.0kb downstream 1.0kb downstream 14764 true scaffold_2: 26990033-27004796 Setaria italica
Seita.2G179200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 26990033-26991032 Setaria italica
Seita.2G179200 2.0kb upstream 2.0kb upstream 15764 true scaffold_2: 26991033-27006796 Setaria italica
Seita.2G179200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 27004797-27006796 Setaria italica
Seita.2G179200 2.0kb downstream 2.0kb downstream 15764 true scaffold_2: 26989033-27004796 Setaria italica
Seita.2G179200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 26989033-26991032 Setaria italica
Seita.2G179200 5.0kb upstream 5.0kb upstream 18764 true scaffold_2: 26991033-27009796 Setaria italica
Seita.2G179200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 27004797-27009796 Setaria italica
Seita.2G179200 5.0kb downstream 5.0kb downstream 18764 true scaffold_2: 26986033-27004796 Setaria italica
Seita.2G179200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 26986033-26991032 Setaria italica
Seita.2G179200 10.0kb upstream 10.0kb upstream 23764 true scaffold_2: 26991033-27014796 Setaria italica
Seita.2G179200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 27004797-27014796 Setaria italica
Seita.2G179200 10.0kb downstream 10.0kb downstream 23764 true scaffold_2: 26981033-27004796 Setaria italica
Seita.2G179200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 26981033-26991032 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180105 5267 Panicoideae View MSA
124583371 5269 Grass View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.206       High
cufflinks 6.476        
cufflinks 4.744        
cufflinks 4.226        
cufflinks 3.906        
cufflinks 5.992        
cufflinks 6.114        
cufflinks 4.057        
cufflinks 4.954        
cufflinks 2.631       Low
cufflinks 6.923        
cufflinks 5.766        
cufflinks 4.165        
cufflinks 4.459        
cufflinks 5.278        
cufflinks 8.57       High
cufflinks 4.582        
cufflinks 10.769       High
cufflinks 2.94       Low
cufflinks 4.182        

0 Strain