Gene : Seita.2G304400 S. italica v2.2
Defline:  (1 of 1) PTHR22884//PTHR22884:SF351 - SET DOMAIN PROTEINS Genomic Order:  3044
Name:  ? Seita.2G304400 Secondary Identifier:  ? PAC:32722473
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G304400 0.5kb upstream 0.5kb upstream 12763 true scaffold_2: 39720276-39733038 Setaria italica
Seita.2G304400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 39720276-39720775 Setaria italica
Seita.2G304400 0.5kb downstream 0.5kb downstream 12763 true scaffold_2: 39720776-39733538 Setaria italica
Seita.2G304400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 39733039-39733538 Setaria italica
Seita.2G304400 1.0kb upstream 1.0kb upstream 13263 true scaffold_2: 39719776-39733038 Setaria italica
Seita.2G304400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 39719776-39720775 Setaria italica
Seita.2G304400 1.0kb downstream 1.0kb downstream 13263 true scaffold_2: 39720776-39734038 Setaria italica
Seita.2G304400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 39733039-39734038 Setaria italica
Seita.2G304400 2.0kb upstream 2.0kb upstream 14263 true scaffold_2: 39718776-39733038 Setaria italica
Seita.2G304400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 39718776-39720775 Setaria italica
Seita.2G304400 2.0kb downstream 2.0kb downstream 14263 true scaffold_2: 39720776-39735038 Setaria italica
Seita.2G304400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 39733039-39735038 Setaria italica
Seita.2G304400 5.0kb upstream 5.0kb upstream 17263 true scaffold_2: 39715776-39733038 Setaria italica
Seita.2G304400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 39715776-39720775 Setaria italica
Seita.2G304400 5.0kb downstream 5.0kb downstream 17263 true scaffold_2: 39720776-39738038 Setaria italica
Seita.2G304400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 39733039-39738038 Setaria italica
Seita.2G304400 10.0kb upstream 10.0kb upstream 22263 true scaffold_2: 39710776-39733038 Setaria italica
Seita.2G304400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 39710776-39720775 Setaria italica
Seita.2G304400 10.0kb downstream 10.0kb downstream 22263 true scaffold_2: 39720776-39743038 Setaria italica
Seita.2G304400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 39733039-39743038 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187381 5267 Panicoideae View MSA
124581597 5269 Grass View MSA
122049261 5273 Angiosperm View MSA
121349718 5274 Embryophyte View MSA
123381414 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.79       High
cufflinks 11.869       High
cufflinks 0.467       Low
cufflinks 0.369       Low
cufflinks 0.819        
cufflinks 10.449       High
cufflinks 5.245        
cufflinks 2.96        
cufflinks 2.465        
cufflinks 3.072        
cufflinks 7.68       High
cufflinks 0.846        
cufflinks 1.612        
cufflinks 0.515       Low
cufflinks 1.542        
cufflinks 7.555       High
cufflinks 1.116        
cufflinks 6.683        
cufflinks 0.26       Low
cufflinks 0.733        

0 Strain