Gene : Seita.2G396500 S. italica v2.2
Defline:  (1 of 18) PTHR11165 - SKP1 Genomic Order:  3965
Name:  ? Seita.2G396500 Secondary Identifier:  ? PAC:32720527
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G396500 0.5kb upstream 0.5kb upstream 980 true scaffold_2: 46110987-46111966 Setaria italica
Seita.2G396500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 46110987-46111486 Setaria italica
Seita.2G396500 0.5kb downstream 0.5kb downstream 980 true scaffold_2: 46111487-46112466 Setaria italica
Seita.2G396500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 46111967-46112466 Setaria italica
Seita.2G396500 1.0kb upstream 1.0kb upstream 1480 true scaffold_2: 46110487-46111966 Setaria italica
Seita.2G396500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 46110487-46111486 Setaria italica
Seita.2G396500 1.0kb downstream 1.0kb downstream 1480 true scaffold_2: 46111487-46112966 Setaria italica
Seita.2G396500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 46111967-46112966 Setaria italica
Seita.2G396500 2.0kb upstream 2.0kb upstream 2480 true scaffold_2: 46109487-46111966 Setaria italica
Seita.2G396500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 46109487-46111486 Setaria italica
Seita.2G396500 2.0kb downstream 2.0kb downstream 2480 true scaffold_2: 46111487-46113966 Setaria italica
Seita.2G396500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 46111967-46113966 Setaria italica
Seita.2G396500 5.0kb upstream 5.0kb upstream 5480 true scaffold_2: 46106487-46111966 Setaria italica
Seita.2G396500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 46106487-46111486 Setaria italica
Seita.2G396500 5.0kb downstream 5.0kb downstream 5480 true scaffold_2: 46111487-46116966 Setaria italica
Seita.2G396500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 46111967-46116966 Setaria italica
Seita.2G396500 10.0kb upstream 10.0kb upstream 10480 true scaffold_2: 46101487-46111966 Setaria italica
Seita.2G396500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 46101487-46111486 Setaria italica
Seita.2G396500 10.0kb downstream 10.0kb downstream 10480 true scaffold_2: 46111487-46121966 Setaria italica
Seita.2G396500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 46111967-46121966 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029816 5273 Angiosperm View MSA
122199884 5267 Panicoideae View MSA
124581525 5269 Grass View MSA
121299090 5274 Embryophyte View MSA
123337010 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.839       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.832        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.045     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.037     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.035     Low  

0 Strain