Gene : Seita.2G414000 S. italica v2.2
Defline:  (1 of 1) PTHR12709:SF3 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 7-RELATED Genomic Order:  4140
Name:  ? Seita.2G414000 Secondary Identifier:  ? PAC:32718800
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G414000 0.5kb upstream 0.5kb upstream 2759 true scaffold_2: 47110244-47113002 Setaria italica
Seita.2G414000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 47112503-47113002 Setaria italica
Seita.2G414000 0.5kb downstream 0.5kb downstream 2759 true scaffold_2: 47109744-47112502 Setaria italica
Seita.2G414000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 47109744-47110243 Setaria italica
Seita.2G414000 1.0kb upstream 1.0kb upstream 3259 true scaffold_2: 47110244-47113502 Setaria italica
Seita.2G414000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 47112503-47113502 Setaria italica
Seita.2G414000 1.0kb downstream 1.0kb downstream 3259 true scaffold_2: 47109244-47112502 Setaria italica
Seita.2G414000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 47109244-47110243 Setaria italica
Seita.2G414000 2.0kb upstream 2.0kb upstream 4259 true scaffold_2: 47110244-47114502 Setaria italica
Seita.2G414000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 47112503-47114502 Setaria italica
Seita.2G414000 2.0kb downstream 2.0kb downstream 4259 true scaffold_2: 47108244-47112502 Setaria italica
Seita.2G414000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 47108244-47110243 Setaria italica
Seita.2G414000 5.0kb upstream 5.0kb upstream 7259 true scaffold_2: 47110244-47117502 Setaria italica
Seita.2G414000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 47112503-47117502 Setaria italica
Seita.2G414000 5.0kb downstream 5.0kb downstream 7259 true scaffold_2: 47105244-47112502 Setaria italica
Seita.2G414000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 47105244-47110243 Setaria italica
Seita.2G414000 10.0kb upstream 10.0kb upstream 12259 true scaffold_2: 47110244-47122502 Setaria italica
Seita.2G414000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 47112503-47122502 Setaria italica
Seita.2G414000 10.0kb downstream 10.0kb downstream 12259 true scaffold_2: 47100244-47112502 Setaria italica
Seita.2G414000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 47100244-47110243 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184318 5267 Panicoideae View MSA
124583871 5269 Grass View MSA
122044713 5273 Angiosperm View MSA
121351673 5274 Embryophyte View MSA
123382271 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.761        
cufflinks 4.786       High
cufflinks 1.405       Low
cufflinks 1.5       Low
cufflinks 1.367       Low
cufflinks 4.36       High
cufflinks 2.754        
cufflinks 2.671        
cufflinks 1.91        
cufflinks 2.51        
cufflinks 2.497        
cufflinks 2.981        
cufflinks 3.873       High
cufflinks 1.299       Low
cufflinks 2.903        
cufflinks 2.849        
cufflinks 3.259        
cufflinks 3.388        
cufflinks 1.212       Low
cufflinks 2.926        

0 Strain