Gene : Seita.3G193600 S. italica v2.2
Defline:  (1 of 1) PTHR10145 - TRANSCRIPTION ELONGATION FACTOR SPT6 Genomic Order:  1936
Name:  ? Seita.3G193600 Secondary Identifier:  ? PAC:32712244
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G193600 0.5kb upstream 0.5kb upstream 9518 true scaffold_3: 14690588-14700105 Setaria italica
Seita.3G193600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 14699606-14700105 Setaria italica
Seita.3G193600 0.5kb downstream 0.5kb downstream 9518 true scaffold_3: 14690088-14699605 Setaria italica
Seita.3G193600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 14690088-14690587 Setaria italica
Seita.3G193600 1.0kb upstream 1.0kb upstream 10018 true scaffold_3: 14690588-14700605 Setaria italica
Seita.3G193600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 14699606-14700605 Setaria italica
Seita.3G193600 1.0kb downstream 1.0kb downstream 10018 true scaffold_3: 14689588-14699605 Setaria italica
Seita.3G193600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 14689588-14690587 Setaria italica
Seita.3G193600 2.0kb upstream 2.0kb upstream 11018 true scaffold_3: 14690588-14701605 Setaria italica
Seita.3G193600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 14699606-14701605 Setaria italica
Seita.3G193600 2.0kb downstream 2.0kb downstream 11018 true scaffold_3: 14688588-14699605 Setaria italica
Seita.3G193600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 14688588-14690587 Setaria italica
Seita.3G193600 5.0kb upstream 5.0kb upstream 14018 true scaffold_3: 14690588-14704605 Setaria italica
Seita.3G193600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 14699606-14704605 Setaria italica
Seita.3G193600 5.0kb downstream 5.0kb downstream 14018 true scaffold_3: 14685588-14699605 Setaria italica
Seita.3G193600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 14685588-14690587 Setaria italica
Seita.3G193600 10.0kb upstream 10.0kb upstream 19018 true scaffold_3: 14690588-14709605 Setaria italica
Seita.3G193600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 14699606-14709605 Setaria italica
Seita.3G193600 10.0kb downstream 10.0kb downstream 19018 true scaffold_3: 14680588-14699605 Setaria italica
Seita.3G193600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 14680588-14690587 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180219 5267 Panicoideae View MSA
124569366 5269 Grass View MSA
122044627 5273 Angiosperm View MSA
121347900 5274 Embryophyte View MSA
123426736 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 52.223     High High
cufflinks 50.327     High High
cufflinks 39.408     High  
cufflinks 35.613     High  
cufflinks 34.448     High  
cufflinks 51.598     High High
cufflinks 38.692     High  
cufflinks 26.554     High Low
cufflinks 34.716     High  
cufflinks 17.238     High Low
cufflinks 42.642     High  
cufflinks 41.477     High  
cufflinks 33.484     High  
cufflinks 30.048     High  
cufflinks 43.287     High  
cufflinks 40.12     High  
cufflinks 27.882     High  
cufflinks 57.742     High High
cufflinks 26.323     High Low
cufflinks 33.162     High  

0 Strain