Gene : Seita.4G044200 S. italica v2.2
Defline:  (1 of 3) PTHR11141//PTHR11141:SF9 - PROTEIN TRANSPORT PROTEIN SEC23 Genomic Order:  442
Name:  ? Seita.4G044200 Secondary Identifier:  ? PAC:32709396
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G044200 0.5kb upstream 0.5kb upstream 9111 true scaffold_4: 3229512-3238622 Setaria italica
Seita.4G044200 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 3238123-3238622 Setaria italica
Seita.4G044200 0.5kb downstream 0.5kb downstream 9111 true scaffold_4: 3229012-3238122 Setaria italica
Seita.4G044200 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 3229012-3229511 Setaria italica
Seita.4G044200 1.0kb upstream 1.0kb upstream 9611 true scaffold_4: 3229512-3239122 Setaria italica
Seita.4G044200 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 3238123-3239122 Setaria italica
Seita.4G044200 1.0kb downstream 1.0kb downstream 9611 true scaffold_4: 3228512-3238122 Setaria italica
Seita.4G044200 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 3228512-3229511 Setaria italica
Seita.4G044200 2.0kb upstream 2.0kb upstream 10611 true scaffold_4: 3229512-3240122 Setaria italica
Seita.4G044200 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 3238123-3240122 Setaria italica
Seita.4G044200 2.0kb downstream 2.0kb downstream 10611 true scaffold_4: 3227512-3238122 Setaria italica
Seita.4G044200 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 3227512-3229511 Setaria italica
Seita.4G044200 5.0kb upstream 5.0kb upstream 13611 true scaffold_4: 3229512-3243122 Setaria italica
Seita.4G044200 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 3238123-3243122 Setaria italica
Seita.4G044200 5.0kb downstream 5.0kb downstream 13611 true scaffold_4: 3224512-3238122 Setaria italica
Seita.4G044200 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 3224512-3229511 Setaria italica
Seita.4G044200 10.0kb upstream 10.0kb upstream 18611 true scaffold_4: 3229512-3248122 Setaria italica
Seita.4G044200 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 3238123-3248122 Setaria italica
Seita.4G044200 10.0kb downstream 10.0kb downstream 18611 true scaffold_4: 3219512-3238122 Setaria italica
Seita.4G044200 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 3219512-3229511 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177392 5267 Panicoideae View MSA
124586474 5269 Grass View MSA
122045932 5273 Angiosperm View MSA
121348482 5274 Embryophyte View MSA
123424383 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.574        
cufflinks 8.704       High
cufflinks 6.196        
cufflinks 5.128       Low
cufflinks 5.099       Low
cufflinks 7.868       High
cufflinks 7.685        
cufflinks 6.606        
cufflinks 6.495        
cufflinks 6.362        
cufflinks 7.375        
cufflinks 5.967        
cufflinks 6.317        
cufflinks 4.533       Low
cufflinks 7.717        
cufflinks 6.39        
cufflinks 7.404        
cufflinks 5.293        
cufflinks 4.339       Low
cufflinks 7.718        

0 Strain