Gene : Seita.4G124300 S. italica v2.2
Defline:  (1 of 51) PF00628 - PHD-finger (PHD) Genomic Order:  1243
Name:  ? Seita.4G124300 Secondary Identifier:  ? PAC:32708294
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G124300 0.5kb upstream 0.5kb upstream 3573 true scaffold_4: 12803823-12807395 Setaria italica
Seita.4G124300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 12803823-12804322 Setaria italica
Seita.4G124300 0.5kb downstream 0.5kb downstream 3573 true scaffold_4: 12804323-12807895 Setaria italica
Seita.4G124300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 12807396-12807895 Setaria italica
Seita.4G124300 1.0kb upstream 1.0kb upstream 4073 true scaffold_4: 12803323-12807395 Setaria italica
Seita.4G124300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 12803323-12804322 Setaria italica
Seita.4G124300 1.0kb downstream 1.0kb downstream 4073 true scaffold_4: 12804323-12808395 Setaria italica
Seita.4G124300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 12807396-12808395 Setaria italica
Seita.4G124300 2.0kb upstream 2.0kb upstream 5073 true scaffold_4: 12802323-12807395 Setaria italica
Seita.4G124300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 12802323-12804322 Setaria italica
Seita.4G124300 2.0kb downstream 2.0kb downstream 5073 true scaffold_4: 12804323-12809395 Setaria italica
Seita.4G124300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 12807396-12809395 Setaria italica
Seita.4G124300 5.0kb upstream 5.0kb upstream 8073 true scaffold_4: 12799323-12807395 Setaria italica
Seita.4G124300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 12799323-12804322 Setaria italica
Seita.4G124300 5.0kb downstream 5.0kb downstream 8073 true scaffold_4: 12804323-12812395 Setaria italica
Seita.4G124300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 12807396-12812395 Setaria italica
Seita.4G124300 10.0kb upstream 10.0kb upstream 13073 true scaffold_4: 12794323-12807395 Setaria italica
Seita.4G124300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 12794323-12804322 Setaria italica
Seita.4G124300 10.0kb downstream 10.0kb downstream 13073 true scaffold_4: 12804323-12817395 Setaria italica
Seita.4G124300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 12807396-12817395 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184147 5267 Panicoideae View MSA
124572112 5269 Grass View MSA
122048494 5273 Angiosperm View MSA
121349825 5274 Embryophyte View MSA
123426689 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.983        
cufflinks 5.061        
cufflinks 5.98        
cufflinks 5.586        
cufflinks 4.633        
cufflinks 4.81        
cufflinks 5.508        
cufflinks 4.003       Low
cufflinks 4.439        
cufflinks 3.689       Low
cufflinks 4.623        
cufflinks 5.012        
cufflinks 5.309        
cufflinks 5.283        
cufflinks 5.684        
cufflinks 7.152       High
cufflinks 5.132        
cufflinks 8.268       High
cufflinks 5.084        
cufflinks 4.265       Low

0 Strain