Gene : Seita.4G227700 S. italica v2.2
Defline:  (1 of 2) PTHR10245 - ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 Genomic Order:  2277
Name:  ? Seita.4G227700 Secondary Identifier:  ? PAC:32708931
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G227700 0.5kb upstream 0.5kb upstream 1348 true scaffold_4: 34871636-34872983 Setaria italica
Seita.4G227700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 34871636-34872135 Setaria italica
Seita.4G227700 0.5kb downstream 0.5kb downstream 1348 true scaffold_4: 34872136-34873483 Setaria italica
Seita.4G227700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 34872984-34873483 Setaria italica
Seita.4G227700 1.0kb upstream 1.0kb upstream 1848 true scaffold_4: 34871136-34872983 Setaria italica
Seita.4G227700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 34871136-34872135 Setaria italica
Seita.4G227700 1.0kb downstream 1.0kb downstream 1848 true scaffold_4: 34872136-34873983 Setaria italica
Seita.4G227700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 34872984-34873983 Setaria italica
Seita.4G227700 2.0kb upstream 2.0kb upstream 2848 true scaffold_4: 34870136-34872983 Setaria italica
Seita.4G227700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 34870136-34872135 Setaria italica
Seita.4G227700 2.0kb downstream 2.0kb downstream 2848 true scaffold_4: 34872136-34874983 Setaria italica
Seita.4G227700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 34872984-34874983 Setaria italica
Seita.4G227700 5.0kb upstream 5.0kb upstream 5848 true scaffold_4: 34867136-34872983 Setaria italica
Seita.4G227700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 34867136-34872135 Setaria italica
Seita.4G227700 5.0kb downstream 5.0kb downstream 5848 true scaffold_4: 34872136-34877983 Setaria italica
Seita.4G227700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 34872984-34877983 Setaria italica
Seita.4G227700 10.0kb upstream 10.0kb upstream 10848 true scaffold_4: 34862136-34872983 Setaria italica
Seita.4G227700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 34862136-34872135 Setaria italica
Seita.4G227700 10.0kb downstream 10.0kb downstream 10848 true scaffold_4: 34872136-34882983 Setaria italica
Seita.4G227700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 34872984-34882983 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026474 5273 Angiosperm View MSA
122195887 5267 Panicoideae View MSA
124572853 5269 Grass View MSA
121347865 5274 Embryophyte View MSA
123380657 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.918        
cufflinks 0.41        
cufflinks 0.163        
cufflinks 0.213        
cufflinks 0.024     Low Low
cufflinks 0.401        
cufflinks 0.155        
cufflinks 0.1     Low Low
cufflinks 0.076     Low Low
cufflinks 17.153     High High
cufflinks 4.771       High
cufflinks 14.709     High High
cufflinks 0.396        
cufflinks 0.383        
cufflinks 0.636        
cufflinks 0.309        
cufflinks 0.737        
cufflinks 4.624       High
cufflinks 0.933        
cufflinks 0.648        

0 Strain