Gene : Seita.4G288600 S. italica v2.2
Defline:  (1 of 1) PTHR31480:SF2 - PHYTOENE SYNTHASE, CHLOROPLASTIC Genomic Order:  2886
Name:  ? Seita.4G288600 Secondary Identifier:  ? PAC:32706785
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CAROTENOID-PWY Setaria italica pathologic  
Sitalica PWY-6475 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G288600 0.5kb upstream 0.5kb upstream 3494 true scaffold_4: 40043909-40047402 Setaria italica
Seita.4G288600 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 40046903-40047402 Setaria italica
Seita.4G288600 0.5kb downstream 0.5kb downstream 3494 true scaffold_4: 40043409-40046902 Setaria italica
Seita.4G288600 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 40043409-40043908 Setaria italica
Seita.4G288600 1.0kb upstream 1.0kb upstream 3994 true scaffold_4: 40043909-40047902 Setaria italica
Seita.4G288600 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 40046903-40047902 Setaria italica
Seita.4G288600 1.0kb downstream 1.0kb downstream 3994 true scaffold_4: 40042909-40046902 Setaria italica
Seita.4G288600 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 40042909-40043908 Setaria italica
Seita.4G288600 2.0kb upstream 2.0kb upstream 4994 true scaffold_4: 40043909-40048902 Setaria italica
Seita.4G288600 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 40046903-40048902 Setaria italica
Seita.4G288600 2.0kb downstream 2.0kb downstream 4994 true scaffold_4: 40041909-40046902 Setaria italica
Seita.4G288600 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 40041909-40043908 Setaria italica
Seita.4G288600 5.0kb upstream 5.0kb upstream 7994 true scaffold_4: 40043909-40051902 Setaria italica
Seita.4G288600 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 40046903-40051902 Setaria italica
Seita.4G288600 5.0kb downstream 5.0kb downstream 7994 true scaffold_4: 40038909-40046902 Setaria italica
Seita.4G288600 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 40038909-40043908 Setaria italica
Seita.4G288600 10.0kb upstream 10.0kb upstream 12994 true scaffold_4: 40043909-40056902 Setaria italica
Seita.4G288600 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 40046903-40056902 Setaria italica
Seita.4G288600 10.0kb downstream 10.0kb downstream 12994 true scaffold_4: 40033909-40046902 Setaria italica
Seita.4G288600 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 40033909-40043908 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122180617 5267 Panicoideae View MSA
124577082 5269 Grass View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.005     High  
cufflinks 26.164     High  
cufflinks 24.343     High  
cufflinks 32.335     High  
cufflinks 84.089     High  
cufflinks 20.746     High  
cufflinks 85.572     High High
cufflinks 84.047     High  
cufflinks 91.841     High High
cufflinks 4.618        
cufflinks 6.932        
cufflinks 0.168       Low
cufflinks 1.136        
cufflinks 17.116     High  
cufflinks 0.082     Low Low
cufflinks 76.965     High  
cufflinks 0.256       Low
cufflinks 10.524        
cufflinks 22.702     High  
cufflinks 0.166       Low

0 Strain