Gene : Seita.5G184800 S. italica v2.2
Defline:  (1 of 3) PTHR23079:SF1 - PROTEIN RRF-3 Genomic Order:  1848
Name:  ? Seita.5G184800 Secondary Identifier:  ? PAC:32683788
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G184800 0.5kb upstream 0.5kb upstream 5858 true scaffold_5: 23493327-23499184 Setaria italica
Seita.5G184800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 23498685-23499184 Setaria italica
Seita.5G184800 0.5kb downstream 0.5kb downstream 5858 true scaffold_5: 23492827-23498684 Setaria italica
Seita.5G184800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 23492827-23493326 Setaria italica
Seita.5G184800 1.0kb upstream 1.0kb upstream 6358 true scaffold_5: 23493327-23499684 Setaria italica
Seita.5G184800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 23498685-23499684 Setaria italica
Seita.5G184800 1.0kb downstream 1.0kb downstream 6358 true scaffold_5: 23492327-23498684 Setaria italica
Seita.5G184800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 23492327-23493326 Setaria italica
Seita.5G184800 2.0kb upstream 2.0kb upstream 7358 true scaffold_5: 23493327-23500684 Setaria italica
Seita.5G184800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 23498685-23500684 Setaria italica
Seita.5G184800 2.0kb downstream 2.0kb downstream 7358 true scaffold_5: 23491327-23498684 Setaria italica
Seita.5G184800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 23491327-23493326 Setaria italica
Seita.5G184800 5.0kb upstream 5.0kb upstream 10358 true scaffold_5: 23493327-23503684 Setaria italica
Seita.5G184800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 23498685-23503684 Setaria italica
Seita.5G184800 5.0kb downstream 5.0kb downstream 10358 true scaffold_5: 23488327-23498684 Setaria italica
Seita.5G184800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 23488327-23493326 Setaria italica
Seita.5G184800 10.0kb upstream 10.0kb upstream 15358 true scaffold_5: 23493327-23508684 Setaria italica
Seita.5G184800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 23498685-23508684 Setaria italica
Seita.5G184800 10.0kb downstream 10.0kb downstream 15358 true scaffold_5: 23483327-23498684 Setaria italica
Seita.5G184800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 23483327-23493326 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189098 5267 Panicoideae View MSA
124588153 5269 Grass View MSA
122045596 5273 Angiosperm View MSA
121346387 5274 Embryophyte View MSA
123428546 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.341        
cufflinks 6.921       High
cufflinks 0.907       Low
cufflinks 0.509       Low
cufflinks 0.683       Low
cufflinks 5.809       High
cufflinks 2.327        
cufflinks 2.005        
cufflinks 1.271        
cufflinks 2.351        
cufflinks 4.552       High
cufflinks 3.056        
cufflinks 1.835        
cufflinks 2.033        
cufflinks 3.66        
cufflinks 2.171        
cufflinks 2.813        
cufflinks 2.624        
cufflinks 0.638       Low
cufflinks 3.413        

0 Strain