Gene : Seita.5G355000 S. italica v2.2
Defline:  (1 of 3) PF06884 - Protein of unknown function (DUF1264) (DUF1264) Genomic Order:  3550
Name:  ? Seita.5G355000 Secondary Identifier:  ? PAC:32686322
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G355000 0.5kb upstream 0.5kb upstream 1607 true scaffold_5: 39620109-39621715 Setaria italica
Seita.5G355000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39621216-39621715 Setaria italica
Seita.5G355000 0.5kb downstream 0.5kb downstream 1607 true scaffold_5: 39619609-39621215 Setaria italica
Seita.5G355000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39619609-39620108 Setaria italica
Seita.5G355000 1.0kb upstream 1.0kb upstream 2107 true scaffold_5: 39620109-39622215 Setaria italica
Seita.5G355000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39621216-39622215 Setaria italica
Seita.5G355000 1.0kb downstream 1.0kb downstream 2107 true scaffold_5: 39619109-39621215 Setaria italica
Seita.5G355000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39619109-39620108 Setaria italica
Seita.5G355000 2.0kb upstream 2.0kb upstream 3107 true scaffold_5: 39620109-39623215 Setaria italica
Seita.5G355000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39621216-39623215 Setaria italica
Seita.5G355000 2.0kb downstream 2.0kb downstream 3107 true scaffold_5: 39618109-39621215 Setaria italica
Seita.5G355000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39618109-39620108 Setaria italica
Seita.5G355000 5.0kb upstream 5.0kb upstream 6107 true scaffold_5: 39620109-39626215 Setaria italica
Seita.5G355000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39621216-39626215 Setaria italica
Seita.5G355000 5.0kb downstream 5.0kb downstream 6107 true scaffold_5: 39615109-39621215 Setaria italica
Seita.5G355000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39615109-39620108 Setaria italica
Seita.5G355000 10.0kb upstream 10.0kb upstream 11107 true scaffold_5: 39620109-39631215 Setaria italica
Seita.5G355000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39621216-39631215 Setaria italica
Seita.5G355000 10.0kb downstream 10.0kb downstream 11107 true scaffold_5: 39610109-39621215 Setaria italica
Seita.5G355000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39610109-39620108 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189123 5267 Panicoideae View MSA
124573848 5269 Grass View MSA
122042151 5273 Angiosperm View MSA
121350259 5274 Embryophyte View MSA
123426811 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.034     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.017     Low Low
cufflinks 0.048     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.371       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low Low
cufflinks 3.534       High
cufflinks 0.055     Low  
cufflinks 0.075     Low  
cufflinks 0.035     Low  
cufflinks 0.03     Low  
cufflinks 0.035     Low  
cufflinks 0.155        
cufflinks 0.139        

0 Strain