Gene : Seita.6G025000 S. italica v2.2
Defline:  (1 of 3) PTHR23079:SF1 - PROTEIN RRF-3 Genomic Order:  250
Name:  ? Seita.6G025000 Secondary Identifier:  ? PAC:32700536
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G025000 0.5kb upstream 0.5kb upstream 6076 true scaffold_6: 1768694-1774769 Setaria italica
Seita.6G025000 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 1768694-1769193 Setaria italica
Seita.6G025000 0.5kb downstream 0.5kb downstream 6076 true scaffold_6: 1769194-1775269 Setaria italica
Seita.6G025000 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 1774770-1775269 Setaria italica
Seita.6G025000 1.0kb upstream 1.0kb upstream 6576 true scaffold_6: 1768194-1774769 Setaria italica
Seita.6G025000 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 1768194-1769193 Setaria italica
Seita.6G025000 1.0kb downstream 1.0kb downstream 6576 true scaffold_6: 1769194-1775769 Setaria italica
Seita.6G025000 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 1774770-1775769 Setaria italica
Seita.6G025000 2.0kb upstream 2.0kb upstream 7576 true scaffold_6: 1767194-1774769 Setaria italica
Seita.6G025000 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 1767194-1769193 Setaria italica
Seita.6G025000 2.0kb downstream 2.0kb downstream 7576 true scaffold_6: 1769194-1776769 Setaria italica
Seita.6G025000 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 1774770-1776769 Setaria italica
Seita.6G025000 5.0kb upstream 5.0kb upstream 10576 true scaffold_6: 1764194-1774769 Setaria italica
Seita.6G025000 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 1764194-1769193 Setaria italica
Seita.6G025000 5.0kb downstream 5.0kb downstream 10576 true scaffold_6: 1769194-1779769 Setaria italica
Seita.6G025000 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 1774770-1779769 Setaria italica
Seita.6G025000 10.0kb upstream 10.0kb upstream 15576 true scaffold_6: 1759194-1774769 Setaria italica
Seita.6G025000 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 1759194-1769193 Setaria italica
Seita.6G025000 10.0kb downstream 10.0kb downstream 15576 true scaffold_6: 1769194-1784769 Setaria italica
Seita.6G025000 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 1774770-1784769 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175187 5267 Panicoideae View MSA
124465312 5269 Grass View MSA
122045596 5273 Angiosperm View MSA
121346387 5274 Embryophyte View MSA
123428546 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.002     Low Low
cufflinks 0.015     Low  
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.016     Low High
cufflinks 0.003     Low  
cufflinks 0.015     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low High
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain