Gene : Seita.6G077400 S. italica v2.2
Defline:  (1 of 5) PF12056 - Protein of unknown function (DUF3537) (DUF3537) Genomic Order:  774
Name:  ? Seita.6G077400 Secondary Identifier:  ? PAC:32701509
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G077400 0.5kb upstream 0.5kb upstream 5574 true scaffold_6: 6952437-6958010 Setaria italica
Seita.6G077400 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6957511-6958010 Setaria italica
Seita.6G077400 0.5kb downstream 0.5kb downstream 5574 true scaffold_6: 6951937-6957510 Setaria italica
Seita.6G077400 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6951937-6952436 Setaria italica
Seita.6G077400 1.0kb upstream 1.0kb upstream 6074 true scaffold_6: 6952437-6958510 Setaria italica
Seita.6G077400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6957511-6958510 Setaria italica
Seita.6G077400 1.0kb downstream 1.0kb downstream 6074 true scaffold_6: 6951437-6957510 Setaria italica
Seita.6G077400 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6951437-6952436 Setaria italica
Seita.6G077400 2.0kb upstream 2.0kb upstream 7074 true scaffold_6: 6952437-6959510 Setaria italica
Seita.6G077400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6957511-6959510 Setaria italica
Seita.6G077400 2.0kb downstream 2.0kb downstream 7074 true scaffold_6: 6950437-6957510 Setaria italica
Seita.6G077400 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6950437-6952436 Setaria italica
Seita.6G077400 5.0kb upstream 5.0kb upstream 10074 true scaffold_6: 6952437-6962510 Setaria italica
Seita.6G077400 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6957511-6962510 Setaria italica
Seita.6G077400 5.0kb downstream 5.0kb downstream 10074 true scaffold_6: 6947437-6957510 Setaria italica
Seita.6G077400 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6947437-6952436 Setaria italica
Seita.6G077400 10.0kb upstream 10.0kb upstream 15074 true scaffold_6: 6952437-6967510 Setaria italica
Seita.6G077400 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6957511-6967510 Setaria italica
Seita.6G077400 10.0kb downstream 10.0kb downstream 15074 true scaffold_6: 6942437-6957510 Setaria italica
Seita.6G077400 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6942437-6952436 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178388 5267 Panicoideae View MSA
124582583 5269 Grass View MSA
122045832 5273 Angiosperm View MSA
121310512 5274 Embryophyte View MSA
123347975 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.866        
cufflinks 3.423        
cufflinks 3.627        
cufflinks 3.751        
cufflinks 2.627       Low
cufflinks 4.386        
cufflinks 5.51        
cufflinks 3.122        
cufflinks 2.071       Low
cufflinks 4.225        
cufflinks 3.768        
cufflinks 5.027        
cufflinks 9.747       High
cufflinks 2.888       Low
cufflinks 7.798       High
cufflinks 8.23       High
cufflinks 7.058        
cufflinks 7.567       High
cufflinks 4.957        
cufflinks 8.249       High

0 Strain