Gene : Seita.7G086400 S. italica v2.2
Defline:  (1 of 1) PTHR11638:SF118 - CHAPERONE PROTEIN CLPD, CHLOROPLASTIC Genomic Order:  864
Name:  ? Seita.7G086400 Secondary Identifier:  ? PAC:32704777
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G086400 0.5kb upstream 0.5kb upstream 6311 true scaffold_7: 19132533-19138843 Setaria italica
Seita.7G086400 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 19132533-19133032 Setaria italica
Seita.7G086400 0.5kb downstream 0.5kb downstream 6311 true scaffold_7: 19133033-19139343 Setaria italica
Seita.7G086400 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 19138844-19139343 Setaria italica
Seita.7G086400 1.0kb upstream 1.0kb upstream 6811 true scaffold_7: 19132033-19138843 Setaria italica
Seita.7G086400 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 19132033-19133032 Setaria italica
Seita.7G086400 1.0kb downstream 1.0kb downstream 6811 true scaffold_7: 19133033-19139843 Setaria italica
Seita.7G086400 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 19138844-19139843 Setaria italica
Seita.7G086400 2.0kb upstream 2.0kb upstream 7811 true scaffold_7: 19131033-19138843 Setaria italica
Seita.7G086400 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 19131033-19133032 Setaria italica
Seita.7G086400 2.0kb downstream 2.0kb downstream 7811 true scaffold_7: 19133033-19140843 Setaria italica
Seita.7G086400 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 19138844-19140843 Setaria italica
Seita.7G086400 5.0kb upstream 5.0kb upstream 10811 true scaffold_7: 19128033-19138843 Setaria italica
Seita.7G086400 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 19128033-19133032 Setaria italica
Seita.7G086400 5.0kb downstream 5.0kb downstream 10811 true scaffold_7: 19133033-19143843 Setaria italica
Seita.7G086400 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 19138844-19143843 Setaria italica
Seita.7G086400 10.0kb upstream 10.0kb upstream 15811 true scaffold_7: 19123033-19138843 Setaria italica
Seita.7G086400 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 19123033-19133032 Setaria italica
Seita.7G086400 10.0kb downstream 10.0kb downstream 15811 true scaffold_7: 19133033-19148843 Setaria italica
Seita.7G086400 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 19138844-19148843 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041323 5273 Angiosperm View MSA
122189485 5267 Panicoideae View MSA
124582251 5269 Grass View MSA
121345985 5274 Embryophyte View MSA
123426532 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.976        
cufflinks 12.427        
cufflinks 73.605     High High
cufflinks 68.053     High High
cufflinks 48.507     High High
cufflinks 13.252        
cufflinks 33.773     High  
cufflinks 27.182     High  
cufflinks 23.35     High  
cufflinks 5.566       Low
cufflinks 10.45        
cufflinks 9.463        
cufflinks 14.886     High  
cufflinks 38.196     High  
cufflinks 11.099        
cufflinks 35.768     High  
cufflinks 8.902       Low
cufflinks 16.129     High  
cufflinks 53.344     High High
cufflinks 8.921       Low

0 Strain