Gene : Seita.7G153300 S. italica v2.2
Defline:  (1 of 2) PTHR22792:SF64 - LA PROTEIN 1-RELATED Genomic Order:  1533
Name:  ? Seita.7G153300 Secondary Identifier:  ? PAC:32702523
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G153300 0.5kb upstream 0.5kb upstream 5527 true scaffold_7: 23914460-23919986 Setaria italica
Seita.7G153300 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 23919487-23919986 Setaria italica
Seita.7G153300 0.5kb downstream 0.5kb downstream 5527 true scaffold_7: 23913960-23919486 Setaria italica
Seita.7G153300 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 23913960-23914459 Setaria italica
Seita.7G153300 1.0kb upstream 1.0kb upstream 6027 true scaffold_7: 23914460-23920486 Setaria italica
Seita.7G153300 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 23919487-23920486 Setaria italica
Seita.7G153300 1.0kb downstream 1.0kb downstream 6027 true scaffold_7: 23913460-23919486 Setaria italica
Seita.7G153300 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 23913460-23914459 Setaria italica
Seita.7G153300 2.0kb upstream 2.0kb upstream 7027 true scaffold_7: 23914460-23921486 Setaria italica
Seita.7G153300 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 23919487-23921486 Setaria italica
Seita.7G153300 2.0kb downstream 2.0kb downstream 7027 true scaffold_7: 23912460-23919486 Setaria italica
Seita.7G153300 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 23912460-23914459 Setaria italica
Seita.7G153300 5.0kb upstream 5.0kb upstream 10027 true scaffold_7: 23914460-23924486 Setaria italica
Seita.7G153300 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 23919487-23924486 Setaria italica
Seita.7G153300 5.0kb downstream 5.0kb downstream 10027 true scaffold_7: 23909460-23919486 Setaria italica
Seita.7G153300 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 23909460-23914459 Setaria italica
Seita.7G153300 10.0kb upstream 10.0kb upstream 15027 true scaffold_7: 23914460-23929486 Setaria italica
Seita.7G153300 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 23919487-23929486 Setaria italica
Seita.7G153300 10.0kb downstream 10.0kb downstream 15027 true scaffold_7: 23904460-23919486 Setaria italica
Seita.7G153300 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 23904460-23914459 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041135 5273 Angiosperm View MSA
122176578 5267 Panicoideae View MSA
124572104 5269 Grass View MSA
121349930 5274 Embryophyte View MSA
123427383 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.743        
cufflinks 9.518        
cufflinks 11.333     High High
cufflinks 7.829        
cufflinks 6.388        
cufflinks 10.295       High
cufflinks 5.812        
cufflinks 7.983        
cufflinks 8.15        
cufflinks 3.623       Low
cufflinks 5.509        
cufflinks 7.907        
cufflinks 4.825       Low
cufflinks 9.747        
cufflinks 8.609        
cufflinks 4.483       Low
cufflinks 11.211       High
cufflinks 4.626       Low
cufflinks 7.148        
cufflinks 10.773       High

0 Strain