Gene : Seita.7G314000 S. italica v2.2
Defline:  (1 of 2) PTHR12341//PTHR12341:SF39 - 5'->3' EXORIBONUCLEASE Genomic Order:  3140
Name:  ? Seita.7G314000 Secondary Identifier:  ? PAC:32702118
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G314000 0.5kb upstream 0.5kb upstream 6506 true scaffold_7: 34850856-34857361 Setaria italica
Seita.7G314000 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 34856862-34857361 Setaria italica
Seita.7G314000 0.5kb downstream 0.5kb downstream 6506 true scaffold_7: 34850356-34856861 Setaria italica
Seita.7G314000 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 34850356-34850855 Setaria italica
Seita.7G314000 1.0kb upstream 1.0kb upstream 7006 true scaffold_7: 34850856-34857861 Setaria italica
Seita.7G314000 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 34856862-34857861 Setaria italica
Seita.7G314000 1.0kb downstream 1.0kb downstream 7006 true scaffold_7: 34849856-34856861 Setaria italica
Seita.7G314000 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 34849856-34850855 Setaria italica
Seita.7G314000 2.0kb upstream 2.0kb upstream 8006 true scaffold_7: 34850856-34858861 Setaria italica
Seita.7G314000 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 34856862-34858861 Setaria italica
Seita.7G314000 2.0kb downstream 2.0kb downstream 8006 true scaffold_7: 34848856-34856861 Setaria italica
Seita.7G314000 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 34848856-34850855 Setaria italica
Seita.7G314000 5.0kb upstream 5.0kb upstream 11006 true scaffold_7: 34850856-34861861 Setaria italica
Seita.7G314000 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 34856862-34861861 Setaria italica
Seita.7G314000 5.0kb downstream 5.0kb downstream 11006 true scaffold_7: 34845856-34856861 Setaria italica
Seita.7G314000 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 34845856-34850855 Setaria italica
Seita.7G314000 10.0kb upstream 10.0kb upstream 16006 true scaffold_7: 34850856-34866861 Setaria italica
Seita.7G314000 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 34856862-34866861 Setaria italica
Seita.7G314000 10.0kb downstream 10.0kb downstream 16006 true scaffold_7: 34840856-34856861 Setaria italica
Seita.7G314000 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 34840856-34850855 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187357 5267 Panicoideae View MSA
124582043 5269 Grass View MSA
122050556 5273 Angiosperm View MSA
123429022 5275 Viridiplantae View MSA
121311990 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.569     High High
cufflinks 4.653        
cufflinks 7.369        
cufflinks 4.236        
cufflinks 4.144        
cufflinks 3.734        
cufflinks 1.793       Low
cufflinks 5.559        
cufflinks 4.689        
cufflinks 4.091        
cufflinks 9.144        
cufflinks 15.546     High High
cufflinks 11.957        
cufflinks 5.707        
cufflinks 16.185     High High
cufflinks 6.253        
cufflinks 16.396     High High
cufflinks 9.786        
cufflinks 3.444       Low
cufflinks 16.676     High High

0 Strain