Gene : Seita.8G054400 S. italica v2.2
Defline:  (1 of 3) PF13234 - rRNA-processing arch domain (rRNA_proc-arch) Genomic Order:  544
Name:  ? Seita.8G054400 Secondary Identifier:  ? PAC:32716935
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G054400 0.5kb upstream 0.5kb upstream 7224 true scaffold_8: 4746488-4753711 Setaria italica
Seita.8G054400 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 4753212-4753711 Setaria italica
Seita.8G054400 0.5kb downstream 0.5kb downstream 7224 true scaffold_8: 4745988-4753211 Setaria italica
Seita.8G054400 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 4745988-4746487 Setaria italica
Seita.8G054400 1.0kb upstream 1.0kb upstream 7724 true scaffold_8: 4746488-4754211 Setaria italica
Seita.8G054400 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 4753212-4754211 Setaria italica
Seita.8G054400 1.0kb downstream 1.0kb downstream 7724 true scaffold_8: 4745488-4753211 Setaria italica
Seita.8G054400 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 4745488-4746487 Setaria italica
Seita.8G054400 2.0kb upstream 2.0kb upstream 8724 true scaffold_8: 4746488-4755211 Setaria italica
Seita.8G054400 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 4753212-4755211 Setaria italica
Seita.8G054400 2.0kb downstream 2.0kb downstream 8724 true scaffold_8: 4744488-4753211 Setaria italica
Seita.8G054400 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 4744488-4746487 Setaria italica
Seita.8G054400 5.0kb upstream 5.0kb upstream 11724 true scaffold_8: 4746488-4758211 Setaria italica
Seita.8G054400 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 4753212-4758211 Setaria italica
Seita.8G054400 5.0kb downstream 5.0kb downstream 11724 true scaffold_8: 4741488-4753211 Setaria italica
Seita.8G054400 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 4741488-4746487 Setaria italica
Seita.8G054400 10.0kb upstream 10.0kb upstream 16724 true scaffold_8: 4746488-4763211 Setaria italica
Seita.8G054400 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 4753212-4763211 Setaria italica
Seita.8G054400 10.0kb downstream 10.0kb downstream 16724 true scaffold_8: 4736488-4753211 Setaria italica
Seita.8G054400 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 4736488-4746487 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190811 5267 Panicoideae View MSA
124582445 5269 Grass View MSA
122043048 5273 Angiosperm View MSA
121343879 5274 Embryophyte View MSA
123425056 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.924       High
cufflinks 13.55     High High
cufflinks 9.877        
cufflinks 8.74        
cufflinks 9.437        
cufflinks 13.432     High High
cufflinks 10.609        
cufflinks 9.069        
cufflinks 12.406        
cufflinks 7.045       Low
cufflinks 11.426        
cufflinks 11.169        
cufflinks 9.711        
cufflinks 8.94        
cufflinks 11.98        
cufflinks 11.076        
cufflinks 10.808        
cufflinks 10.392        
cufflinks 7.087       Low
cufflinks 10.899        

0 Strain