Gene : Seita.8G027800 S. italica v2.2
Defline:  (1 of 2) PTHR12765 - RED PROTEIN IK FACTOR CYTOKINE IK Genomic Order:  278
Name:  ? Seita.8G027800 Secondary Identifier:  ? PAC:32716621
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G027800 0.5kb upstream 0.5kb upstream 6531 true scaffold_8: 1709909-1716439 Setaria italica
Seita.8G027800 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 1715940-1716439 Setaria italica
Seita.8G027800 0.5kb downstream 0.5kb downstream 6531 true scaffold_8: 1709409-1715939 Setaria italica
Seita.8G027800 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 1709409-1709908 Setaria italica
Seita.8G027800 1.0kb upstream 1.0kb upstream 7031 true scaffold_8: 1709909-1716939 Setaria italica
Seita.8G027800 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 1715940-1716939 Setaria italica
Seita.8G027800 1.0kb downstream 1.0kb downstream 7031 true scaffold_8: 1708909-1715939 Setaria italica
Seita.8G027800 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 1708909-1709908 Setaria italica
Seita.8G027800 2.0kb upstream 2.0kb upstream 8031 true scaffold_8: 1709909-1717939 Setaria italica
Seita.8G027800 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 1715940-1717939 Setaria italica
Seita.8G027800 2.0kb downstream 2.0kb downstream 8031 true scaffold_8: 1707909-1715939 Setaria italica
Seita.8G027800 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 1707909-1709908 Setaria italica
Seita.8G027800 5.0kb upstream 5.0kb upstream 11031 true scaffold_8: 1709909-1720939 Setaria italica
Seita.8G027800 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 1715940-1720939 Setaria italica
Seita.8G027800 5.0kb downstream 5.0kb downstream 11031 true scaffold_8: 1704909-1715939 Setaria italica
Seita.8G027800 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 1704909-1709908 Setaria italica
Seita.8G027800 10.0kb upstream 10.0kb upstream 16031 true scaffold_8: 1709909-1725939 Setaria italica
Seita.8G027800 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 1715940-1725939 Setaria italica
Seita.8G027800 10.0kb downstream 10.0kb downstream 16031 true scaffold_8: 1699909-1715939 Setaria italica
Seita.8G027800 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 1699909-1709908 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122063648 5267 Panicoideae View MSA
124363115 5269 Grass View MSA
122047980 5273 Angiosperm View MSA
121351353 5274 Embryophyte View MSA
123426127 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.199       High
cufflinks 4.212        
cufflinks 4.316        
cufflinks 4.097        
cufflinks 3.854        
cufflinks 4.122        
cufflinks 4.002        
cufflinks 4.316        
cufflinks 3.975        
cufflinks 2.217       Low
cufflinks 3.923        
cufflinks 4.476        
cufflinks 3.632        
cufflinks 3.867        
cufflinks 4.39        
cufflinks 4.791        
cufflinks 4.153        
cufflinks 6.584       High
cufflinks 3.198       Low
cufflinks 3.64        

0 Strain