Gene : Seita.8G236800 S. italica v2.2
Defline:  (1 of 2) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN Genomic Order:  2368
Name:  ? Seita.8G236800 Secondary Identifier:  ? PAC:32716709
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G236800 0.5kb upstream 0.5kb upstream 5527 true scaffold_8: 38988077-38993603 Setaria italica
Seita.8G236800 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 38988077-38988576 Setaria italica
Seita.8G236800 0.5kb downstream 0.5kb downstream 5527 true scaffold_8: 38988577-38994103 Setaria italica
Seita.8G236800 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 38993604-38994103 Setaria italica
Seita.8G236800 1.0kb upstream 1.0kb upstream 6027 true scaffold_8: 38987577-38993603 Setaria italica
Seita.8G236800 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 38987577-38988576 Setaria italica
Seita.8G236800 1.0kb downstream 1.0kb downstream 6027 true scaffold_8: 38988577-38994603 Setaria italica
Seita.8G236800 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 38993604-38994603 Setaria italica
Seita.8G236800 2.0kb upstream 2.0kb upstream 7027 true scaffold_8: 38986577-38993603 Setaria italica
Seita.8G236800 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 38986577-38988576 Setaria italica
Seita.8G236800 2.0kb downstream 2.0kb downstream 7027 true scaffold_8: 38988577-38995603 Setaria italica
Seita.8G236800 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 38993604-38995603 Setaria italica
Seita.8G236800 5.0kb upstream 5.0kb upstream 10027 true scaffold_8: 38983577-38993603 Setaria italica
Seita.8G236800 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 38983577-38988576 Setaria italica
Seita.8G236800 5.0kb downstream 5.0kb downstream 10027 true scaffold_8: 38988577-38998603 Setaria italica
Seita.8G236800 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 38993604-38998603 Setaria italica
Seita.8G236800 10.0kb upstream 10.0kb upstream 15027 true scaffold_8: 38978577-38993603 Setaria italica
Seita.8G236800 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 38978577-38988576 Setaria italica
Seita.8G236800 10.0kb downstream 10.0kb downstream 15027 true scaffold_8: 38988577-39003603 Setaria italica
Seita.8G236800 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 38993604-39003603 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195164 5267 Panicoideae View MSA
124574359 5269 Grass View MSA
122050030 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349493 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 50.624     High High
cufflinks 42.231     High  
cufflinks 26.114     High  
cufflinks 19.657     High Low
cufflinks 18.154     High Low
cufflinks 43.24     High High
cufflinks 29.941     High  
cufflinks 31.065     High  
cufflinks 24.078     High  
cufflinks 31.051     High  
cufflinks 36.537     High  
cufflinks 33.388     High  
cufflinks 25.497     High  
cufflinks 26.775     High  
cufflinks 35.299     High  
cufflinks 36.314     High  
cufflinks 39.29     High  
cufflinks 50.982     High High
cufflinks 18.03     High Low
cufflinks 36.128     High  

0 Strain