Gene : Seita.9G215900 S. italica v2.2
Defline:  (1 of 1) PTHR15377 - TRANSCRIPTION FACTOR CA150B RELATED - TCERG1 Genomic Order:  2159
Name:  ? Seita.9G215900 Secondary Identifier:  ? PAC:32691157
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G215900 0.5kb upstream 0.5kb upstream 10686 true scaffold_9: 15727386-15738071 Setaria italica
Seita.9G215900 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 15727386-15727885 Setaria italica
Seita.9G215900 0.5kb downstream 0.5kb downstream 10686 true scaffold_9: 15727886-15738571 Setaria italica
Seita.9G215900 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 15738072-15738571 Setaria italica
Seita.9G215900 1.0kb upstream 1.0kb upstream 11186 true scaffold_9: 15726886-15738071 Setaria italica
Seita.9G215900 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 15726886-15727885 Setaria italica
Seita.9G215900 1.0kb downstream 1.0kb downstream 11186 true scaffold_9: 15727886-15739071 Setaria italica
Seita.9G215900 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 15738072-15739071 Setaria italica
Seita.9G215900 2.0kb upstream 2.0kb upstream 12186 true scaffold_9: 15725886-15738071 Setaria italica
Seita.9G215900 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 15725886-15727885 Setaria italica
Seita.9G215900 2.0kb downstream 2.0kb downstream 12186 true scaffold_9: 15727886-15740071 Setaria italica
Seita.9G215900 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 15738072-15740071 Setaria italica
Seita.9G215900 5.0kb upstream 5.0kb upstream 15186 true scaffold_9: 15722886-15738071 Setaria italica
Seita.9G215900 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 15722886-15727885 Setaria italica
Seita.9G215900 5.0kb downstream 5.0kb downstream 15186 true scaffold_9: 15727886-15743071 Setaria italica
Seita.9G215900 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 15738072-15743071 Setaria italica
Seita.9G215900 10.0kb upstream 10.0kb upstream 20186 true scaffold_9: 15717886-15738071 Setaria italica
Seita.9G215900 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 15717886-15727885 Setaria italica
Seita.9G215900 10.0kb downstream 10.0kb downstream 20186 true scaffold_9: 15727886-15748071 Setaria italica
Seita.9G215900 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 15738072-15748071 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182407 5267 Panicoideae View MSA
124580566 5269 Grass View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.536        
cufflinks 6.939        
cufflinks 5.71        
cufflinks 5.121        
cufflinks 4.951        
cufflinks 7.576        
cufflinks 6.109        
cufflinks 5.64        
cufflinks 6.374        
cufflinks 3.581       Low
cufflinks 5.947        
cufflinks 5.7        
cufflinks 4.893        
cufflinks 4.914        
cufflinks 5.613        
cufflinks 7.666       High
cufflinks 5.389        
cufflinks 12.164     High High
cufflinks 3.782       Low
cufflinks 5.252        

0 Strain