Gene : RDR2 A. thaliana TAIR10
Primary Identifier:  ? AT4G11130 Defline:  (1 of 1) PTHR23079:SF5 - RNA-DEPENDENT RNA POLYMERASE 2
Genomic Order:  936 Name:  ? AT4G11130
Secondary Identifier:  ? PAC:19646280
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G11130 0.5kb upstream 0.5kb upstream 4419 true Chr4: 6780022-6784440 Arabidopsis thaliana
AT4G11130 0.5kb upstream 0.5kb upstream 500 false Chr4: 6780022-6780521 Arabidopsis thaliana
AT4G11130 0.5kb downstream 0.5kb downstream 4419 true Chr4: 6780522-6784940 Arabidopsis thaliana
AT4G11130 0.5kb downstream 0.5kb downstream 500 false Chr4: 6784441-6784940 Arabidopsis thaliana
AT4G11130 1.0kb upstream 1.0kb upstream 4919 true Chr4: 6779522-6784440 Arabidopsis thaliana
AT4G11130 1.0kb upstream 1.0kb upstream 1000 false Chr4: 6779522-6780521 Arabidopsis thaliana
AT4G11130 1.0kb downstream 1.0kb downstream 4919 true Chr4: 6780522-6785440 Arabidopsis thaliana
AT4G11130 1.0kb downstream 1.0kb downstream 1000 false Chr4: 6784441-6785440 Arabidopsis thaliana
AT4G11130 2.0kb upstream 2.0kb upstream 5919 true Chr4: 6778522-6784440 Arabidopsis thaliana
AT4G11130 2.0kb upstream 2.0kb upstream 2000 false Chr4: 6778522-6780521 Arabidopsis thaliana
AT4G11130 2.0kb downstream 2.0kb downstream 5919 true Chr4: 6780522-6786440 Arabidopsis thaliana
AT4G11130 2.0kb downstream 2.0kb downstream 2000 false Chr4: 6784441-6786440 Arabidopsis thaliana
AT4G11130 5.0kb upstream 5.0kb upstream 8919 true Chr4: 6775522-6784440 Arabidopsis thaliana
AT4G11130 5.0kb upstream 5.0kb upstream 5000 false Chr4: 6775522-6780521 Arabidopsis thaliana
AT4G11130 5.0kb downstream 5.0kb downstream 8919 true Chr4: 6780522-6789440 Arabidopsis thaliana
AT4G11130 5.0kb downstream 5.0kb downstream 5000 false Chr4: 6784441-6789440 Arabidopsis thaliana
AT4G11130 10.0kb upstream 10.0kb upstream 13919 true Chr4: 6770522-6784440 Arabidopsis thaliana
AT4G11130 10.0kb upstream 10.0kb upstream 10000 false Chr4: 6770522-6780521 Arabidopsis thaliana
AT4G11130 10.0kb downstream 10.0kb downstream 13919 true Chr4: 6780522-6794440 Arabidopsis thaliana
AT4G11130 10.0kb downstream 10.0kb downstream 10000 false Chr4: 6784441-6794440 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368937 5261 Brassicaceae View MSA
123830340 5264 Brassicales-Malvales View MSA
124321664 5266 SBM View MSA
124240918 5268 Malvidae View MSA
124065042 5270 Rosid View MSA
123747025 5271 Pentapetalae View MSA
122788970 5272 Eudicot View MSA
122044390 5273 Angiosperm View MSA
121351040 5274 Embryophyte View MSA
123428546 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.424        
cufflinks 5.858        
cufflinks 1.494        
cufflinks 6.322        
cufflinks 1.485        
cufflinks 5.889        

0 Strain