Gene : AT4G13860 A. thaliana TAIR10
Defline:  (1 of 234) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  1227
Name:  ? AT4G13860 Secondary Identifier:  ? PAC:19647234
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G13860 0.5kb upstream 0.5kb upstream 1062 true Chr4: 8022101-8023162 Arabidopsis thaliana
AT4G13860 0.5kb upstream 0.5kb upstream 500 false Chr4: 8022101-8022600 Arabidopsis thaliana
AT4G13860 0.5kb downstream 0.5kb downstream 1062 true Chr4: 8022601-8023662 Arabidopsis thaliana
AT4G13860 0.5kb downstream 0.5kb downstream 500 false Chr4: 8023163-8023662 Arabidopsis thaliana
AT4G13860 1.0kb upstream 1.0kb upstream 1562 true Chr4: 8021601-8023162 Arabidopsis thaliana
AT4G13860 1.0kb upstream 1.0kb upstream 1000 false Chr4: 8021601-8022600 Arabidopsis thaliana
AT4G13860 1.0kb downstream 1.0kb downstream 1562 true Chr4: 8022601-8024162 Arabidopsis thaliana
AT4G13860 1.0kb downstream 1.0kb downstream 1000 false Chr4: 8023163-8024162 Arabidopsis thaliana
AT4G13860 2.0kb upstream 2.0kb upstream 2562 true Chr4: 8020601-8023162 Arabidopsis thaliana
AT4G13860 2.0kb upstream 2.0kb upstream 2000 false Chr4: 8020601-8022600 Arabidopsis thaliana
AT4G13860 2.0kb downstream 2.0kb downstream 2562 true Chr4: 8022601-8025162 Arabidopsis thaliana
AT4G13860 2.0kb downstream 2.0kb downstream 2000 false Chr4: 8023163-8025162 Arabidopsis thaliana
AT4G13860 5.0kb upstream 5.0kb upstream 5562 true Chr4: 8017601-8023162 Arabidopsis thaliana
AT4G13860 5.0kb upstream 5.0kb upstream 5000 false Chr4: 8017601-8022600 Arabidopsis thaliana
AT4G13860 5.0kb downstream 5.0kb downstream 5562 true Chr4: 8022601-8028162 Arabidopsis thaliana
AT4G13860 5.0kb downstream 5.0kb downstream 5000 false Chr4: 8023163-8028162 Arabidopsis thaliana
AT4G13860 10.0kb upstream 10.0kb upstream 10562 true Chr4: 8012601-8023162 Arabidopsis thaliana
AT4G13860 10.0kb upstream 10.0kb upstream 10000 false Chr4: 8012601-8022600 Arabidopsis thaliana
AT4G13860 10.0kb downstream 10.0kb downstream 10562 true Chr4: 8022601-8033162 Arabidopsis thaliana
AT4G13860 10.0kb downstream 10.0kb downstream 10000 false Chr4: 8023163-8033162 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122330674 5261 Brassicaceae Singleton cluster - no MSA
123771902 5264 Brassicales-Malvales Singleton cluster - no MSA
124270426 5266 SBM Singleton cluster - no MSA
124126498 5268 Malvidae Singleton cluster - no MSA
123855405 5270 Rosid Singleton cluster - no MSA
123753688 5271 Pentapetalae View MSA
122793597 5272 Eudicot View MSA
122051373 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.566       Low
cufflinks 48.727     High  
cufflinks 1.763        
cufflinks 53.604     High High
cufflinks 1.027        
cufflinks 23.894        

0 Strain