Gene : AT4G28890 A. thaliana TAIR10
Defline:  (1 of 2) PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Genomic Order:  2920
Name:  ? AT4G28890 Secondary Identifier:  ? PAC:19645237
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G28890 0.5kb upstream 0.5kb upstream 1903 true Chr4: 14256333-14258235 Arabidopsis thaliana
AT4G28890 0.5kb upstream 0.5kb upstream 500 false Chr4: 14257736-14258235 Arabidopsis thaliana
AT4G28890 0.5kb downstream 0.5kb downstream 1903 true Chr4: 14255833-14257735 Arabidopsis thaliana
AT4G28890 0.5kb downstream 0.5kb downstream 500 false Chr4: 14255833-14256332 Arabidopsis thaliana
AT4G28890 1.0kb upstream 1.0kb upstream 2403 true Chr4: 14256333-14258735 Arabidopsis thaliana
AT4G28890 1.0kb upstream 1.0kb upstream 1000 false Chr4: 14257736-14258735 Arabidopsis thaliana
AT4G28890 1.0kb downstream 1.0kb downstream 2403 true Chr4: 14255333-14257735 Arabidopsis thaliana
AT4G28890 1.0kb downstream 1.0kb downstream 1000 false Chr4: 14255333-14256332 Arabidopsis thaliana
AT4G28890 2.0kb upstream 2.0kb upstream 3403 true Chr4: 14256333-14259735 Arabidopsis thaliana
AT4G28890 2.0kb upstream 2.0kb upstream 2000 false Chr4: 14257736-14259735 Arabidopsis thaliana
AT4G28890 2.0kb downstream 2.0kb downstream 3403 true Chr4: 14254333-14257735 Arabidopsis thaliana
AT4G28890 2.0kb downstream 2.0kb downstream 2000 false Chr4: 14254333-14256332 Arabidopsis thaliana
AT4G28890 5.0kb upstream 5.0kb upstream 6403 true Chr4: 14256333-14262735 Arabidopsis thaliana
AT4G28890 5.0kb upstream 5.0kb upstream 5000 false Chr4: 14257736-14262735 Arabidopsis thaliana
AT4G28890 5.0kb downstream 5.0kb downstream 6403 true Chr4: 14251333-14257735 Arabidopsis thaliana
AT4G28890 5.0kb downstream 5.0kb downstream 5000 false Chr4: 14251333-14256332 Arabidopsis thaliana
AT4G28890 10.0kb upstream 10.0kb upstream 11403 true Chr4: 14256333-14267735 Arabidopsis thaliana
AT4G28890 10.0kb upstream 10.0kb upstream 10000 false Chr4: 14257736-14267735 Arabidopsis thaliana
AT4G28890 10.0kb downstream 10.0kb downstream 11403 true Chr4: 14246333-14257735 Arabidopsis thaliana
AT4G28890 10.0kb downstream 10.0kb downstream 10000 false Chr4: 14246333-14256332 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369091 5261 Brassicaceae View MSA
123839327 5264 Brassicales-Malvales View MSA
124337844 5266 SBM View MSA
124251275 5268 Malvidae View MSA
124068292 5270 Rosid View MSA
123750856 5271 Pentapetalae View MSA
122796096 5272 Eudicot View MSA
122047388 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121346576 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.01     Low  
cufflinks 3.038        
cufflinks 0.012     Low  
cufflinks 5.494       High
cufflinks 0.011     Low  
cufflinks 3.114        

0 Strain